Analysis of interatomic Contacts of Structural Units in PDB entry:
4E7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4E7E entry

There are 8 chains in PDB entry 4E7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 66
A	GLY 68	GLU 419
B	MET 1	ARG 66
B	GLY 68	GLU 419
C	MET 1	ARG 66
C	GLY 68	GLU 419
D	MET 1	ARG 66
D	GLY 68	GLU 419

There are 71 helices in PDB entry 4E7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	32	Right-handed alpha
Helix 2	2	A	33	35	Right-handed 310
Helix 3	3	A	47	60	Right-handed alpha
Helix 4	4	A	90	95	Right-handed 310
Helix 5	5	A	96	105	Right-handed alpha
Helix 6	6	A	122	132	Right-handed alpha
Helix 7	7	A	162	174	Right-handed alpha
Helix 8	8	A	188	201	Right-handed alpha
Helix 9	9	A	231	244	Right-handed alpha
Helix 10	10	A	255	258	Right-handed 310
Helix 11	11	A	259	269	Right-handed alpha
Helix 12	12	A	303	305	Right-handed 310
Helix 13	13	A	306	316	Right-handed alpha
Helix 14	14	A	334	340	Right-handed alpha
Helix 15	15	A	369	383	Right-handed alpha
Helix 16	16	A	392	397	Right-handed alpha
Helix 17	17	A	401	408	Right-handed alpha
Helix 18	18	B	21	32	Right-handed alpha
Helix 19	19	B	33	35	Right-handed 310
Helix 20	20	B	47	60	Right-handed alpha
Helix 21	21	B	83	88	Right-handed alpha
Helix 22	22	B	90	95	Right-handed 310
Helix 23	23	B	96	105	Right-handed alpha
Helix 24	24	B	122	132	Right-handed alpha
Helix 25	25	B	162	174	Right-handed alpha
Helix 26	26	B	188	201	Right-handed alpha
Helix 27	27	B	231	245	Right-handed alpha
Helix 28	28	B	255	258	Right-handed 310
Helix 29	29	B	259	269	Right-handed alpha
Helix 30	30	B	303	305	Right-handed 310
Helix 31	31	B	306	316	Right-handed alpha
Helix 32	32	B	333	341	Right-handed alpha
Helix 33	33	B	369	383	Right-handed alpha
Helix 34	34	B	392	399	Right-handed alpha
Helix 35	35	B	401	408	Right-handed alpha
Helix 36	36	C	21	32	Right-handed alpha
Helix 37	37	C	33	35	Right-handed 310
Helix 38	38	C	47	59	Right-handed alpha
Helix 39	39	C	83	90	Right-handed alpha
Helix 40	40	C	91	95	Right-handed 310
Helix 41	41	C	96	105	Right-handed alpha
Helix 42	42	C	122	132	Right-handed alpha
Helix 43	43	C	162	174	Right-handed alpha
Helix 44	44	C	188	201	Right-handed alpha
Helix 45	45	C	231	244	Right-handed alpha
Helix 46	46	C	255	258	Right-handed 310
Helix 47	47	C	259	269	Right-handed alpha
Helix 48	48	C	303	305	Right-handed 310
Helix 49	49	C	306	315	Right-handed alpha
Helix 50	50	C	333	340	Right-handed alpha
Helix 51	51	C	369	383	Right-handed alpha
Helix 52	52	C	392	399	Right-handed alpha
Helix 53	53	C	401	408	Right-handed alpha
Helix 54	54	D	21	32	Right-handed alpha
Helix 55	55	D	33	35	Right-handed 310
Helix 56	56	D	47	60	Right-handed alpha
Helix 57	57	D	83	88	Right-handed alpha
Helix 58	58	D	90	95	Right-handed 310
Helix 59	59	D	96	105	Right-handed alpha
Helix 60	60	D	122	132	Right-handed alpha
Helix 61	61	D	162	174	Right-handed alpha
Helix 62	62	D	188	201	Right-handed alpha
Helix 63	63	D	231	244	Right-handed alpha
Helix 64	64	D	255	258	Right-handed 310
Helix 65	65	D	259	269	Right-handed alpha
Helix 66	66	D	303	305	Right-handed 310
Helix 67	67	D	306	316	Right-handed alpha
Helix 68	68	D	334	341	Right-handed alpha
Helix 69	69	D	369	383	Right-handed alpha
Helix 70	70	D	392	399	Right-handed alpha
Helix 71	71	D	401	409	Right-handed alpha

There are 22 sheets in PDB entry 4E7E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	385	390	parallel
Strand 3	A	3	8	anti-parallel
Strand 4	A	412	416	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	248	252	parallel
Strand 3	A	279	283	anti-parallel
Strand 4	A	272	275	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	70	73	anti-parallel
Strand 3	A	39	42	anti-parallel
Strand 4	A	224	227	parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	106	110	parallel
Strand 3	A	142	146	anti-parallel
Strand 4	A	135	138	anti-parallel
Strand 5	C	135	139	anti-parallel
Strand 6	C	142	146	anti-parallel
Strand 7	C	106	110	anti-parallel
Strand 8	C	81	82	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	179	183	parallel
Strand 3	A	212	216	anti-parallel
Strand 4	A	204	206	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	320	325	parallel
Strand 3	A	351	355	anti-parallel
Strand 4	A	344	348	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	385	390	parallel
Strand 3	B	3	8	anti-parallel
Strand 4	B	412	416	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	248	252	parallel
Strand 3	B	279	283	anti-parallel
Strand 4	B	272	275	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	70	73	anti-parallel
Strand 3	B	39	42	anti-parallel
Strand 4	B	224	227	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	106	110	parallel
Strand 3	B	142	146	anti-parallel
Strand 4	B	135	139	anti-parallel
Strand 5	D	135	139	anti-parallel
Strand 6	D	142	146	anti-parallel
Strand 7	D	106	110	anti-parallel
Strand 8	D	81	82	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	179	183	parallel
Strand 3	B	212	216	anti-parallel
Strand 4	B	204	206	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	320	324	parallel
Strand 3	B	351	355	anti-parallel
Strand 4	B	345	348	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	385	390	parallel
Strand 3	C	3	8	anti-parallel
Strand 4	C	413	416	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	248	252	parallel
Strand 3	C	279	283	anti-parallel
Strand 4	C	272	275	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	70	73	anti-parallel
Strand 3	C	39	42	anti-parallel
Strand 4	C	224	227	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	179	183	parallel
Strand 3	C	212	216	anti-parallel
Strand 4	C	204	206	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	320	324	parallel
Strand 3	C	351	355	anti-parallel
Strand 4	C	344	348	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	385	390	parallel
Strand 3	D	3	8	anti-parallel
Strand 4	D	412	416	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	248	252	parallel
Strand 3	D	279	283	anti-parallel
Strand 4	D	272	275	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	70	73	anti-parallel
Strand 3	D	39	42	anti-parallel
Strand 4	D	224	227	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	179	183	parallel
Strand 3	D	212	216	anti-parallel
Strand 4	D	204	206	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	296	first strand
Strand 2	D	320	325	parallel
Strand 3	D	351	355	anti-parallel
Strand 4	D	344	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4E7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
4E7E