Analysis of interatomic Contacts of Structural Units in PDB entry:
4E8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E8B entry

There is 1 chain in PDB entry 4E8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3LEU 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 4E8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 30Right-handed alpha
Helix 2
2
A
90 102Right-handed alpha
Helix 3
3
A
120 143Right-handed alpha
Helix 4
4
A
156 162Right-handed alpha
Helix 5
5
A
180 182Right-handed 310
Helix 6
6
A
200 210Right-handed alpha
Helix 7
7
A
223 239Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4E8B. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
39 43parallel
Strand 3
A
48 57anti-parallel
Strand 4
A
62 71anti-parallel
Strand 5
A
17 19anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
106 111parallel
Strand 3
A
79 85parallel
Strand 4
A
188 193parallel
Strand 5
A
167 171parallel
Strand 6
A
213 216parallel
Strand 7
A
177 178parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il