Analysis of interatomic Contacts of Structural Units in PDB entry:
4E8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E8Y entry

There are 2 chains in PDB entry 4E8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7LEU 314
B
 PRO 9PHE 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4E8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
60 70Right-handed alpha
Helix 3
3
A
83 95Right-handed alpha
Helix 4
4
A
133 148Right-handed alpha
Helix 5
5
A
149 151Right-handed 310
Helix 6
6
A
166 177Right-handed alpha
Helix 7
7
A
190 194Right-handed 310
Helix 8
8
A
202 211Right-handed alpha
Helix 9
9
A
215 229Right-handed alpha
Helix 10
10
A
240 242Right-handed 310
Helix 11
11
A
267 282Right-handed alpha
Helix 12
12
A
285 301Right-handed alpha
Helix 13
13
B
11 17Right-handed alpha
Helix 14
14
B
60 67Right-handed alpha
Helix 15
15
B
83 95Right-handed alpha
Helix 16
16
B
133 148Right-handed alpha
Helix 17
17
B
149 151Right-handed 310
Helix 18
18
B
166 177Right-handed alpha
Helix 19
19
B
190 194Right-handed 310
Helix 20
20
B
202 211Right-handed alpha
Helix 21
21
B
215 230Right-handed alpha
Helix 22
22
B
240 242Right-handed 310
Helix 23
23
B
267 282Right-handed alpha
Helix 24
24
B
285 301Right-handed alpha
Helix 25
25
B
310 315Right-handed alpha
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There are 4 sheets in PDB entry 4E8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 105first strand
Strand 2
A
73 81parallel
Strand 3
A
19 24parallel
Strand 4
A
153 157parallel
Strand 5
A
180 184parallel
Strand 6
A
198 199parallel
Strand 7
A
234 238parallel
Strand 8
A
244 248anti-parallel
Strand 9
A
251 255anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 59first strand
Strand 2
A
26 39anti-parallel
Strand 3
A
112 118parallel
Strand 4
A
121 128anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 105first strand
Strand 2
B
73 81parallel
Strand 3
B
19 24parallel
Strand 4
B
153 157parallel
Strand 5
B
180 184parallel
Strand 6
B
198 199parallel
Strand 7
B
234 238parallel
Strand 8
B
244 248anti-parallel
Strand 9
B
251 255anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 59first strand
Strand 2
B
26 39anti-parallel
Strand 3
B
112 118parallel
Strand 4
B
121 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il