Analysis of interatomic Contacts of Structural Units in PDB entry:
4E94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E94 entry

There are 2 chains in PDB entry 4E94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 343
B
 VAL 2TYR 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4E94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed 310
Helix 2
2
A
20 34Right-handed alpha
Helix 3
3
A
47 54Right-handed alpha
Helix 4
4
A
54 68Right-handed alpha
Helix 5
5
A
82 85Right-handed 310
Helix 6
6
A
86 92Right-handed alpha
Helix 7
7
A
108 110Right-handed 310
Helix 8
8
A
111 121Right-handed alpha
Helix 9
9
A
130 135Right-handed alpha
Helix 10
10
A
143 157Right-handed alpha
Helix 11
11
A
176 180Right-handed 310
Helix 12
12
A
210 218Right-handed alpha
Helix 13
13
A
224 232Right-handed alpha
Helix 14
14
A
237 242Right-handed alpha
Helix 15
15
A
256 269Right-handed alpha
Helix 16
16
A
271 276Right-handed alpha
Helix 17
17
A
284 288Right-handed 310
Helix 18
18
A
289 301Right-handed alpha
Helix 19
19
B
13 19Right-handed 310
Helix 20
20
B
20 34Right-handed alpha
Helix 21
21
B
47 54Right-handed alpha
Helix 22
22
B
54 68Right-handed alpha
Helix 23
23
B
82 85Right-handed 310
Helix 24
24
B
86 92Right-handed alpha
Helix 25
25
B
110 121Right-handed alpha
Helix 26
26
B
143 157Right-handed alpha
Helix 27
27
B
176 180Right-handed 310
Helix 28
28
B
210 218Right-handed alpha
Helix 29
29
B
224 232Right-handed alpha
Helix 30
30
B
237 242Right-handed alpha
Helix 31
31
B
256 269Right-handed alpha
Helix 32
32
B
270 275Right-handed 310
Helix 33
33
B
284 288Right-handed 310
Helix 34
34
B
289 301Right-handed alpha
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There are 6 sheets in PDB entry 4E94. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
4 8parallel
Strand 3
A
73 76parallel
Strand 4
A
104 107parallel
Strand 5
A
126 127parallel
Strand 6
A
322 323anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
336 340anti-parallel
Strand 3
A
327 331anti-parallel
Strand 4
A
200 209anti-parallel
Strand 5
A
245 249parallel
Strand 6
A
278 282parallel
Strand 7
A
307 311parallel
Strand 8
A
193 196anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
186 188anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
4 8parallel
Strand 3
B
73 76parallel
Strand 4
B
104 107parallel
Strand 5
B
126 127parallel
Strand 6
B
322 323anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
336 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
200 209anti-parallel
Strand 5
B
245 249parallel
Strand 6
B
278 282parallel
Strand 7
B
307 311parallel
Strand 8
B
193 196anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
186 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il