Analysis of interatomic Contacts of Structural Units in PDB entry:
4EAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EAE entry

There are 2 chains in PDB entry 4EAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 100LYS 286
B
 ALA 99LYS 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4EAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
107 111Right-handed 310
Helix 2
2
A
112 119Right-handed alpha
Helix 3
3
A
163 169Right-handed 310
Helix 4
4
A
193 196Right-handed 310
Helix 5
5
A
245 255Right-handed alpha
Helix 6
6
A
262 267Right-handed 310
Helix 7
7
B
107 111Right-handed 310
Helix 8
8
B
112 119Right-handed alpha
Helix 9
9
B
163 169Right-handed 310
Helix 10
10
B
193 196Right-handed 310
Helix 11
11
B
246 253Right-handed alpha
Helix 12
12
B
262 267Right-handed 310
Helix 13
13
B
272 276Right-handed 310
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There are 7 sheets in PDB entry 4EAE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 128first strand
Strand 2
A
140 153anti-parallel
Strand 3
A
133 136anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 128first strand
Strand 2
A
140 153anti-parallel
Strand 3
A
173 184anti-parallel
Strand 4
A
235 244anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
229 230anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
204 207anti-parallel
Strand 3
B
278 282anti-parallel
Strand 4
B
257 260anti-parallel
Strand 5
B
198 200anti-parallel
Strand 6
B
204 207anti-parallel
Strand 7
A
278 282anti-parallel
Strand 8
A
257 260anti-parallel
Strand 9
A
198 200anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 128first strand
Strand 2
B
140 153anti-parallel
Strand 3
B
133 136anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 128first strand
Strand 2
B
140 153anti-parallel
Strand 3
B
173 184anti-parallel
Strand 4
B
235 245anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
229 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il