Analysis of interatomic Contacts of Structural Units in PDB entry:
4EAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EAG entry

There are 3 chains in PDB entry 4EAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 458ARG 582
B
 MET 186ILE 270
C
 SER 26THR 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4EAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
469 484Right-handed alpha
Helix 2
2
A
564 582Right-handed alpha
Helix 3
3
C
27 33Right-handed alpha
Helix 4
4
C
36 41Right-handed 310
Helix 5
5
C
55 66Right-handed alpha
Helix 6
6
C
86 100Right-handed alpha
Helix 7
7
C
102 107Right-handed alpha
Helix 8
8
C
112 120Right-handed alpha
Helix 9
9
C
121 126Right-handed alpha
Helix 10
10
C
136 147Right-handed alpha
Helix 11
11
C
167 181Right-handed alpha
Helix 12
12
C
186 190Right-handed 310
Helix 13
13
C
191 196Right-handed alpha
Helix 14
14
C
211 223Right-handed alpha
Helix 15
15
C
242 249Right-handed alpha
Helix 16
16
C
260 265Right-handed alpha
Helix 17
17
C
283 295Right-handed alpha
Helix 18
18
C
314 322Right-handed alpha
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There are 6 sheets in PDB entry 4EAG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
A
460 462anti-parallel
Strand 3
B
240 242anti-parallel
Strand 4
B
248 257anti-parallel
Strand 5
B
260 269anti-parallel
Strand 6
C
44 51parallel
Strand 7
C
71 75parallel
Strand 8
C
80 85anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 492first strand
Strand 2
A
495 501anti-parallel
Strand 3
A
508 517anti-parallel
Strand 4
A
523 529anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
234 235parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 155first strand
Strand 2
C
162 166anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 207first strand
Strand 2
C
226 230parallel
Strand 3
C
236 241anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 278first strand
Strand 2
C
298 302parallel
Strand 3
C
308 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il