Analysis of interatomic Contacts of Structural Units in PDB entry:
4EB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EB5 entry

There are 4 chains in PDB entry 4EB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TYR 380
B
 ALA 2PRO 378
C
 TYR 2MET 139
D
 TYR 2MET 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4EB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
35 57Right-handed alpha
Helix 3
3
A
68 85Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
98 109Right-handed alpha
Helix 6
6
A
127 135Right-handed alpha
Helix 7
7
A
156 165Right-handed alpha
Helix 8
8
A
184 189Right-handed alpha
Helix 9
9
A
198 201Right-handed 310
Helix 10
10
A
226 230Right-handed 310
Helix 11
11
A
236 273Right-handed alpha
Helix 12
12
A
300 312Right-handed alpha
Helix 13
13
A
319 323Right-handed 310
Helix 14
14
A
329 335Right-handed alpha
Helix 15
15
A
338 343Right-handed alpha
Helix 16
16
A
355 376Right-handed alpha
Helix 17
17
B
13 26Right-handed alpha
Helix 18
18
B
35 56Right-handed alpha
Helix 19
19
B
57 59Right-handed 310
Helix 20
20
B
68 84Right-handed alpha
Helix 21
21
B
85 88Right-handed 310
Helix 22
22
B
98 111Right-handed alpha
Helix 23
23
B
127 135Right-handed alpha
Helix 24
24
B
156 165Right-handed alpha
Helix 25
25
B
198 201Right-handed 310
Helix 26
26
B
226 230Right-handed 310
Helix 27
27
B
236 273Right-handed alpha
Helix 28
28
B
300 311Right-handed alpha
Helix 29
29
B
319 323Right-handed 310
Helix 30
30
B
329 335Right-handed alpha
Helix 31
31
B
341 343Right-handed 310
Helix 32
32
B
355 375Right-handed alpha
Helix 33
33
C
3 12Right-handed alpha
Helix 34
34
C
58 73Right-handed alpha
Helix 35
35
C
76 81Right-handed alpha
Helix 36
36
C
84 93Right-handed alpha
Helix 37
37
C
99 121Right-handed alpha
Helix 38
38
C
123 130Right-handed alpha
Helix 39
39
C
132 138Right-handed alpha
Helix 40
40
D
3 12Right-handed alpha
Helix 41
41
D
58 72Right-handed alpha
Helix 42
42
D
76 81Right-handed alpha
Helix 43
43
D
84 92Right-handed alpha
Helix 44
44
D
99 113Right-handed alpha
Helix 45
45
D
115 120Right-handed alpha
Helix 46
46
D
123 130Right-handed alpha
Helix 47
47
D
132 137Right-handed alpha
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There are 6 sheets in PDB entry 4EB5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
192 196anti-parallel
Strand 4
A
169 173parallel
Strand 5
A
139 143parallel
Strand 6
A
90 94parallel
Strand 7
A
114 118parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
291 296anti-parallel
Strand 3
A
345 349anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 66first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
192 196anti-parallel
Strand 4
B
169 173parallel
Strand 5
B
139 143parallel
Strand 6
B
90 94parallel
Strand 7
B
114 118parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 280first strand
Strand 2
B
291 296anti-parallel
Strand 3
B
345 349anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 29first strand
Strand 2
C
36 43anti-parallel
Strand 3
C
48 56anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 29first strand
Strand 2
D
36 42anti-parallel
Strand 3
D
50 56anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il