Analysis of interatomic Contacts of Structural Units in PDB entry:
4EB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EB6 entry

There are 3 chains in PDB entry 4EB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 440
B
 MET 1GLU 442
C
 MET 1GLU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 4EB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
22 25Right-handed 310
Helix 3
3
A
48 51Right-handed 310
Helix 4
4
A
72 81Right-handed alpha
Helix 5
5
A
82 85Right-handed 310
Helix 6
6
A
102 108Right-handed alpha
Helix 7
7
A
109 127Right-handed alpha
Helix 8
8
A
148 162Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
206 211Right-handed alpha
Helix 11
11
A
223 239Right-handed alpha
Helix 12
12
A
239 244Right-handed alpha
Helix 13
13
A
297 301Right-handed 310
Helix 14
14
A
324 337Right-handed alpha
Helix 15
15
A
381 386Right-handed 310
Helix 16
16
A
387 401Right-handed alpha
Helix 17
17
A
404 411Right-handed alpha
Helix 18
18
A
415 435Right-handed alpha
Helix 19
19
B
10 29Right-handed alpha
Helix 20
20
B
73 77Right-handed 310
Helix 21
21
B
88 90Right-handed 310
Helix 22
22
B
102 108Right-handed alpha
Helix 23
23
B
108 128Right-handed alpha
Helix 24
24
B
147 161Right-handed alpha
Helix 25
25
B
182 198Right-handed alpha
Helix 26
26
B
206 211Right-handed alpha
Helix 27
27
B
224 239Right-handed alpha
Helix 28
28
B
251 260Right-handed alpha
Helix 29
29
B
287 295Right-handed alpha
Helix 30
30
B
296 301Right-handed 310
Helix 31
31
B
306 310Right-handed 310
Helix 32
32
B
324 339Right-handed alpha
Helix 33
33
B
340 343Right-handed 310
Helix 34
34
B
384 400Right-handed alpha
Helix 35
35
B
405 410Right-handed alpha
Helix 36
36
B
415 437Right-handed alpha
Helix 37
37
C
10 25Right-handed alpha
Helix 38
38
C
72 80Right-handed alpha
Helix 39
39
C
102 108Right-handed alpha
Helix 40
40
C
109 122Right-handed alpha
Helix 41
41
C
122 127Right-handed alpha
Helix 42
42
C
143 162Right-handed alpha
Helix 43
43
C
182 194Right-handed alpha
Helix 44
44
C
206 216Right-handed alpha
Helix 45
45
C
223 239Right-handed alpha
Helix 46
46
C
251 260Right-handed alpha
Helix 47
47
C
287 295Right-handed alpha
Helix 48
48
C
324 339Right-handed alpha
Helix 49
49
C
381 383Right-handed 310
Helix 50
50
C
384 401Right-handed alpha
Helix 51
51
C
404 411Right-handed alpha
Helix 52
52
C
415 435Right-handed alpha
Helix 53
53
D
10 29Right-handed alpha
Helix 54
54
D
73 77Right-handed 310
Helix 55
55
D
102 108Right-handed alpha
Helix 56
56
D
108 119Right-handed alpha
Helix 57
57
D
148 161Right-handed alpha
Helix 58
58
D
182 198Right-handed alpha
Helix 59
59
D
205 215Right-handed alpha
Helix 60
60
D
223 240Right-handed alpha
Helix 61
61
D
241 244Right-handed 310
Helix 62
62
D
251 260Right-handed alpha
Helix 63
63
D
287 293Right-handed alpha
Helix 64
64
D
297 301Right-handed 310
Helix 65
65
D
306 310Right-handed 310
Helix 66
66
D
324 338Right-handed alpha
Helix 67
67
D
339 343Right-handed 310
Helix 68
68
D
384 402Right-handed alpha
Helix 69
69
D
404 411Right-handed alpha
Helix 70
70
D
415 437Right-handed alpha
Helix 71
71
E
46 67Right-handed alpha
Helix 72
72
E
67 137Right-handed alpha
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There are 10 sheets in PDB entry 4EB6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
315 321anti-parallel
Strand 4
A
350 356parallel
Strand 5
E
17 23anti-parallel
Strand 6
E
7 8anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
315 321anti-parallel
Strand 4
A
350 356parallel
Strand 5
E
17 23anti-parallel
Strand 6
E
12 14anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
3 9parallel
Strand 4
C
132 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 205parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 273first strand
Strand 2
C
373 377anti-parallel
Strand 3
C
316 321anti-parallel
Strand 4
C
352 356parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
6 9parallel
Strand 4
D
134 140parallel
Strand 5
D
165 171parallel
Strand 6
D
200 203parallel
Strand 7
D
267 273parallel
Strand 8
D
374 381anti-parallel
Strand 9
D
312 320anti-parallel
Strand 10
D
351 355parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il