Analysis of interatomic Contacts of Structural Units in PDB entry:
4EB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EB8 entry

There are 3 chains in PDB entry 4EB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -1ASP 286
B
 THR -1ASP 286
C
 GLY 4ASP 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4EB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 21Right-handed alpha
Helix 2
2
A
35 40Right-handed 310
Helix 3
3
A
86 90Right-handed 310
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
97 107Right-handed alpha
Helix 6
6
A
138 142Right-handed alpha
Helix 7
7
A
167 179Right-handed alpha
Helix 8
8
A
202 212Right-handed alpha
Helix 9
9
A
221 231Right-handed alpha
Helix 10
10
A
256 280Right-handed alpha
Helix 11
11
B
6 20Right-handed alpha
Helix 12
12
B
35 40Right-handed 310
Helix 13
13
B
51 53Right-handed 310
Helix 14
14
B
86 90Right-handed 310
Helix 15
15
B
92 97Right-handed alpha
Helix 16
16
B
97 106Right-handed alpha
Helix 17
17
B
138 142Right-handed alpha
Helix 18
18
B
167 181Right-handed alpha
Helix 19
19
B
202 212Right-handed alpha
Helix 20
20
B
221 231Right-handed alpha
Helix 21
21
B
256 280Right-handed alpha
Helix 22
22
C
6 21Right-handed alpha
Helix 23
23
C
35 40Right-handed 310
Helix 24
24
C
51 53Right-handed 310
Helix 25
25
C
86 90Right-handed 310
Helix 26
26
C
92 97Right-handed alpha
Helix 27
27
C
97 107Right-handed alpha
Helix 28
28
C
138 143Right-handed alpha
Helix 29
29
C
167 177Right-handed alpha
Helix 30
30
C
178 182Right-handed 310
Helix 31
31
C
202 213Right-handed alpha
Helix 32
32
C
221 231Right-handed alpha
Helix 33
33
C
256 267Right-handed alpha
Helix 34
34
C
267 280Right-handed alpha
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There are 3 sheets in PDB entry 4EB8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
67 73anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
27 31parallel
Strand 5
A
110 119parallel
Strand 6
A
234 244parallel
Strand 7
A
129 137anti-parallel
Strand 8
A
188 194parallel
Strand 9
A
216 218parallel
Strand 10
A
110 119anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 49first strand
Strand 2
B
67 73anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
27 31parallel
Strand 5
B
110 119parallel
Strand 6
B
234 244parallel
Strand 7
B
129 137anti-parallel
Strand 8
B
188 194parallel
Strand 9
B
216 218parallel
Strand 10
B
110 119anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 49first strand
Strand 2
C
67 73anti-parallel
Strand 3
C
76 82anti-parallel
Strand 4
C
27 31parallel
Strand 5
C
110 119parallel
Strand 6
C
234 244parallel
Strand 7
C
129 137anti-parallel
Strand 8
C
188 194parallel
Strand 9
C
216 218parallel
Strand 10
C
110 119anti-parallel
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