Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4EBF entry

There are 6 chains in PDB entry 4EBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	PRO 333
B	MSE 1	LYS 330
C	GLY 0	LEU 328
D	LEU 2	ALA 331
E	LEU 2	ILE 322
F	LEU 2	ARG 327

There are 94 helices in PDB entry 4EBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	20	Right-handed alpha
Helix 2	2	A	35	44	Right-handed alpha
Helix 3	3	A	58	64	Right-handed alpha
Helix 4	4	A	82	89	Right-handed alpha
Helix 5	5	A	100	117	Right-handed alpha
Helix 6	6	A	118	128	Right-handed alpha
Helix 7	7	A	154	164	Right-handed alpha
Helix 8	8	A	180	188	Right-handed alpha
Helix 9	9	A	193	201	Right-handed alpha
Helix 10	10	A	219	225	Right-handed alpha
Helix 11	11	A	237	241	Right-handed 310
Helix 12	12	A	242	252	Right-handed alpha
Helix 13	13	A	263	267	Right-handed 310
Helix 14	14	A	278	284	Right-handed alpha
Helix 15	15	A	297	317	Right-handed alpha
Helix 16	16	B	12	20	Right-handed alpha
Helix 17	17	B	35	44	Right-handed alpha
Helix 18	18	B	58	64	Right-handed alpha
Helix 19	19	B	82	89	Right-handed alpha
Helix 20	20	B	100	117	Right-handed alpha
Helix 21	21	B	118	128	Right-handed alpha
Helix 22	22	B	154	164	Right-handed alpha
Helix 23	23	B	165	168	Right-handed 310
Helix 24	24	B	180	188	Right-handed alpha
Helix 25	25	B	193	201	Right-handed alpha
Helix 26	26	B	219	224	Right-handed alpha
Helix 27	27	B	237	241	Right-handed 310
Helix 28	28	B	242	252	Right-handed alpha
Helix 29	29	B	263	267	Right-handed 310
Helix 30	30	B	278	283	Right-handed alpha
Helix 31	31	B	297	317	Right-handed alpha
Helix 32	32	C	12	20	Right-handed alpha
Helix 33	33	C	35	44	Right-handed alpha
Helix 34	34	C	58	64	Right-handed alpha
Helix 35	35	C	82	89	Right-handed alpha
Helix 36	36	C	100	117	Right-handed alpha
Helix 37	37	C	118	129	Right-handed alpha
Helix 38	38	C	154	164	Right-handed alpha
Helix 39	39	C	180	188	Right-handed alpha
Helix 40	40	C	193	201	Right-handed alpha
Helix 41	41	C	219	224	Right-handed alpha
Helix 42	42	C	237	241	Right-handed 310
Helix 43	43	C	242	252	Right-handed alpha
Helix 44	44	C	263	267	Right-handed 310
Helix 45	45	C	278	284	Right-handed alpha
Helix 46	46	C	297	318	Right-handed alpha
Helix 47	47	D	12	20	Right-handed alpha
Helix 48	48	D	35	44	Right-handed alpha
Helix 49	49	D	58	64	Right-handed alpha
Helix 50	50	D	82	89	Right-handed alpha
Helix 51	51	D	100	117	Right-handed alpha
Helix 52	52	D	118	128	Right-handed alpha
Helix 53	53	D	154	164	Right-handed alpha
Helix 54	54	D	165	168	Right-handed 310
Helix 55	55	D	180	188	Right-handed alpha
Helix 56	56	D	193	201	Right-handed alpha
Helix 57	57	D	219	224	Right-handed alpha
Helix 58	58	D	237	241	Right-handed 310
Helix 59	59	D	242	252	Right-handed alpha
Helix 60	60	D	263	267	Right-handed 310
Helix 61	61	D	278	284	Right-handed alpha
Helix 62	62	D	297	317	Right-handed alpha
Helix 63	63	E	12	20	Right-handed alpha
Helix 64	64	E	35	44	Right-handed alpha
Helix 65	65	E	58	64	Right-handed alpha
Helix 66	66	E	77	81	Right-handed 310
Helix 67	67	E	82	90	Right-handed alpha
Helix 68	68	E	100	117	Right-handed alpha
Helix 69	69	E	118	129	Right-handed alpha
Helix 70	70	E	154	164	Right-handed alpha
Helix 71	71	E	180	188	Right-handed alpha
Helix 72	72	E	193	201	Right-handed alpha
Helix 73	73	E	219	224	Right-handed alpha
Helix 74	74	E	237	241	Right-handed 310
Helix 75	75	E	242	252	Right-handed alpha
Helix 76	76	E	263	267	Right-handed 310
Helix 77	77	E	278	284	Right-handed alpha
Helix 78	78	E	297	317	Right-handed alpha
Helix 79	79	F	12	20	Right-handed alpha
Helix 80	80	F	21	23	Right-handed 310
Helix 81	81	F	35	43	Right-handed alpha
Helix 82	82	F	58	64	Right-handed alpha
Helix 83	83	F	82	89	Right-handed alpha
Helix 84	84	F	100	117	Right-handed alpha
Helix 85	85	F	118	128	Right-handed alpha
Helix 86	86	F	154	164	Right-handed alpha
Helix 87	87	F	180	188	Right-handed alpha
Helix 88	88	F	193	201	Right-handed alpha
Helix 89	89	F	219	224	Right-handed alpha
Helix 90	90	F	237	241	Right-handed 310
Helix 91	91	F	242	252	Right-handed alpha
Helix 92	92	F	263	267	Right-handed 310
Helix 93	93	F	278	283	Right-handed alpha
Helix 94	94	F	297	317	Right-handed alpha

There are 12 sheets in PDB entry 4EBF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	4	7	parallel
Strand 3	A	48	51	parallel
Strand 4	A	70	73	parallel
Strand 5	A	92	94	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	170	174	parallel
Strand 3	A	147	151	parallel
Strand 4	A	203	206	parallel
Strand 5	A	230	234	parallel
Strand 6	A	255	260	parallel
Strand 7	A	287	289	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	4	7	parallel
Strand 3	B	48	51	parallel
Strand 4	B	70	73	parallel
Strand 5	B	92	94	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	170	174	parallel
Strand 3	B	147	151	parallel
Strand 4	B	203	206	parallel
Strand 5	B	231	234	parallel
Strand 6	B	257	260	parallel
Strand 7	B	287	289	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	4	7	parallel
Strand 3	C	48	51	parallel
Strand 4	C	70	73	parallel
Strand 5	C	92	94	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	170	174	parallel
Strand 3	C	147	151	parallel
Strand 4	C	203	206	parallel
Strand 5	C	230	234	parallel
Strand 6	C	255	260	parallel
Strand 7	C	287	289	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	4	7	parallel
Strand 3	D	48	51	parallel
Strand 4	D	70	73	parallel
Strand 5	D	92	94	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	D	170	174	parallel
Strand 3	D	147	151	parallel
Strand 4	D	203	206	parallel
Strand 5	D	230	234	parallel
Strand 6	D	255	260	parallel
Strand 7	D	287	289	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	27	first strand
Strand 2	E	4	7	parallel
Strand 3	E	48	51	parallel
Strand 4	E	70	73	parallel
Strand 5	E	92	94	parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	191	first strand
Strand 2	E	170	174	parallel
Strand 3	E	147	151	parallel
Strand 4	E	203	206	parallel
Strand 5	E	231	234	parallel
Strand 6	E	257	260	parallel
Strand 7	E	287	289	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	26	first strand
Strand 2	F	4	7	parallel
Strand 3	F	48	51	parallel
Strand 4	F	70	73	parallel
Strand 5	F	92	94	parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	191	first strand
Strand 2	F	170	174	parallel
Strand 3	F	147	151	parallel
Strand 4	F	203	206	parallel
Strand 5	F	230	234	parallel
Strand 6	F	255	260	parallel
Strand 7	F	287	289	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4EBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBF