Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EBJ entry

There are 2 chains in PDB entry 4EBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -6GLN 251
B
 GLU -6GLN 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4EBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-6 16Right-handed alpha
Helix 2
2
A
26 31Right-handed alpha
Helix 3
3
A
74 80Right-handed alpha
Helix 4
4
A
81 83Right-handed 310
Helix 5
5
A
104 112Right-handed alpha
Helix 6
6
A
124 142Right-handed alpha
Helix 7
7
A
143 163Right-handed alpha
Helix 8
8
A
164 166Right-handed 310
Helix 9
9
A
173 183Right-handed alpha
Helix 10
10
A
190 200Right-handed alpha
Helix 11
11
A
206 223Right-handed alpha
Helix 12
12
A
228 233Right-handed alpha
Helix 13
13
A
233 242Right-handed alpha
Helix 14
14
A
243 251Right-handed alpha
Helix 15
15
B
-5 16Right-handed alpha
Helix 16
16
B
26 31Right-handed alpha
Helix 17
17
B
74 80Right-handed alpha
Helix 18
18
B
81 83Right-handed 310
Helix 19
19
B
104 112Right-handed alpha
Helix 20
20
B
124 142Right-handed alpha
Helix 21
21
B
143 163Right-handed alpha
Helix 22
22
B
164 166Right-handed 310
Helix 23
23
B
173 183Right-handed alpha
Helix 24
24
B
190 200Right-handed alpha
Helix 25
25
B
206 223Right-handed alpha
Helix 26
26
B
228 233Right-handed alpha
Helix 27
27
B
233 242Right-handed alpha
Helix 28
28
B
243 251Right-handed alpha
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There are 3 sheets in PDB entry 4EBJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 60first strand
Strand 2
A
63 73anti-parallel
Strand 3
A
39 45parallel
Strand 4
A
19 25anti-parallel
Strand 5
A
93 102anti-parallel
Strand 6
A
115 118anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 60first strand
Strand 2
B
63 73anti-parallel
Strand 3
B
39 45parallel
Strand 4
B
19 25anti-parallel
Strand 5
B
98 102anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
115 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il