Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EBL entry

There are 4 chains in PDB entry 4EBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29ALA 293
B
 ASP 29ALA 293
C
 ASP 29ALA 293
D
 ASP 29ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4EBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
69 71Right-handed 310
Helix 3
3
A
72 83Right-handed alpha
Helix 4
4
A
87 92Right-handed 310
Helix 5
5
A
98 102Right-handed 310
Helix 6
6
A
108 113Right-handed 310
Helix 7
7
A
119 129Right-handed alpha
Helix 8
8
A
131 143Right-handed alpha
Helix 9
9
A
145 145Right-handed 310
Helix 10
10
A
145 155Right-handed alpha
Helix 11
11
A
167 171Right-handed 310
Helix 12
12
A
182 195Right-handed alpha
Helix 13
13
A
200 213Right-handed alpha
Helix 14
14
A
220 225Right-handed alpha
Helix 15
15
A
267 271Right-handed 310
Helix 16
16
A
277 293Right-handed alpha
Helix 17
17
B
30 42Right-handed alpha
Helix 18
18
B
69 71Right-handed 310
Helix 19
19
B
72 83Right-handed alpha
Helix 20
20
B
87 92Right-handed 310
Helix 21
21
B
98 102Right-handed 310
Helix 22
22
B
108 113Right-handed 310
Helix 23
23
B
119 129Right-handed alpha
Helix 24
24
B
131 143Right-handed alpha
Helix 25
25
B
144 145Right-handed 310
Helix 26
26
B
145 155Right-handed alpha
Helix 27
27
B
167 172Right-handed 310
Helix 28
28
B
182 195Right-handed alpha
Helix 29
29
B
200 213Right-handed alpha
Helix 30
30
B
220 225Right-handed alpha
Helix 31
31
B
267 271Right-handed 310
Helix 32
32
B
277 293Right-handed alpha
Helix 33
33
C
30 42Right-handed alpha
Helix 34
34
C
69 71Right-handed 310
Helix 35
35
C
72 83Right-handed alpha
Helix 36
36
C
87 92Right-handed 310
Helix 37
37
C
98 102Right-handed 310
Helix 38
38
C
108 112Right-handed 310
Helix 39
39
C
119 129Right-handed alpha
Helix 40
40
C
131 143Right-handed alpha
Helix 41
41
C
144 145Right-handed 310
Helix 42
42
C
145 155Right-handed alpha
Helix 43
43
C
167 172Right-handed 310
Helix 44
44
C
182 195Right-handed alpha
Helix 45
45
C
200 213Right-handed alpha
Helix 46
46
C
220 225Right-handed alpha
Helix 47
47
C
267 271Right-handed 310
Helix 48
48
C
277 293Right-handed alpha
Helix 49
49
D
30 42Right-handed alpha
Helix 50
50
D
69 71Right-handed 310
Helix 51
51
D
72 83Right-handed alpha
Helix 52
52
D
87 92Right-handed 310
Helix 53
53
D
98 102Right-handed 310
Helix 54
54
D
108 113Right-handed 310
Helix 55
55
D
119 129Right-handed alpha
Helix 56
56
D
131 143Right-handed alpha
Helix 57
57
D
145 145Right-handed 310
Helix 58
58
D
145 155Right-handed alpha
Helix 59
59
D
167 171Right-handed 310
Helix 60
60
D
182 195Right-handed alpha
Helix 61
61
D
200 213Right-handed alpha
Helix 62
62
D
220 225Right-handed alpha
Helix 63
63
D
267 271Right-handed 310
Helix 64
64
D
277 293Right-handed alpha
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There are 12 sheets in PDB entry 4EBL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
230 238anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
44 49anti-parallel
Strand 3
B
258 266anti-parallel
Strand 4
B
244 251anti-parallel
Strand 5
B
230 237anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
258 266anti-parallel
Strand 4
C
244 251anti-parallel
Strand 5
C
230 237anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
117 118anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
44 49anti-parallel
Strand 3
D
258 266anti-parallel
Strand 4
D
243 251anti-parallel
Strand 5
D
230 238anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
180 181anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
D
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il