Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EBR entry

There are 2 chains in PDB entry 4EBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLU 165
B
 GLY -1GLU 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4EBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 17Right-handed alpha
Helix 2
2
A
98 107Right-handed alpha
Helix 3
3
A
134 138Right-handed 310
Helix 4
4
A
145 148Right-handed 310
Helix 5
5
A
149 158Right-handed alpha
Helix 6
6
A
158 163Right-handed alpha
Helix 7
7
B
3 17Right-handed alpha
Helix 8
8
B
98 108Right-handed alpha
Helix 9
9
B
134 138Right-handed 310
Helix 10
10
B
145 147Right-handed 310
Helix 11
11
B
148 158Right-handed alpha
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There are 2 sheets in PDB entry 4EBR. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
61 70anti-parallel
Strand 4
A
75 88anti-parallel
Strand 5
A
125 129anti-parallel
Strand 6
A
117 122anti-parallel
Strand 7
B
117 122anti-parallel
Strand 8
B
125 129anti-parallel
Strand 9
B
75 88anti-parallel
Strand 10
B
61 70anti-parallel
Strand 11
B
38 42anti-parallel
Strand 12
B
26 31anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
75 88anti-parallel
Strand 3
A
125 129anti-parallel
Strand 4
A
117 122anti-parallel
Strand 5
B
117 122anti-parallel
Strand 6
B
125 129anti-parallel
Strand 7
B
75 88anti-parallel
Strand 8
B
91 96anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il