Analysis of interatomic Contacts of Structural Units in PDB entry:
4EBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EBU entry

There is 1 chain in PDB entry 4EBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -13VAL 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4EBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 41Right-handed alpha
Helix 2
2
A
55 68Right-handed alpha
Helix 3
3
A
104 109Right-handed 310
Helix 4
4
A
112 121Right-handed alpha
Helix 5
5
A
130 136Right-handed alpha
Helix 6
6
A
137 154Right-handed alpha
Helix 7
7
A
165 169Right-handed 310
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
192 200Right-handed alpha
Helix 10
10
A
204 215Right-handed alpha
Helix 11
11
A
253 268Right-handed alpha
Helix 12
12
A
271 287Right-handed alpha
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There are 3 sheets in PDB entry 4EBU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
2 6parallel
Strand 3
A
125 129parallel
Strand 4
A
157 161parallel
Strand 5
A
188 189parallel
Strand 6
A
219 222parallel
Strand 7
A
229 233anti-parallel
Strand 8
A
236 240anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
10 15anti-parallel
Strand 3
A
84 89parallel
Strand 4
A
96 100anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
76 77parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il