Analysis of interatomic Contacts of Structural Units in PDB entry:
4EDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EDJ entry

There are 2 chains in PDB entry 4EDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLU 208
B
 SER 6GLU 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4EDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 31Right-handed alpha
Helix 2
2
A
53 62Right-handed alpha
Helix 3
3
A
107 111Right-handed 310
Helix 4
4
A
122 127Right-handed alpha
Helix 5
5
A
147 156Right-handed alpha
Helix 6
6
A
197 201Right-handed 310
Helix 7
7
B
26 32Right-handed alpha
Helix 8
8
B
53 62Right-handed alpha
Helix 9
9
B
107 111Right-handed 310
Helix 10
10
B
122 127Right-handed alpha
Helix 11
11
B
146 156Right-handed alpha
Helix 12
12
B
197 201Right-handed 310
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There are 6 sheets in PDB entry 4EDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
79 84anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
15 22anti-parallel
Strand 4
A
98 104anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
192 195anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
79 84anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
15 22anti-parallel
Strand 4
B
98 104anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 178first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
134 139anti-parallel
Strand 4
B
113 118anti-parallel
Strand 5
B
192 195anti-parallel
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