Analysis of interatomic Contacts of Structural Units in PDB entry:
4EDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EDK entry

There is 1 chain in PDB entry 4EDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 108ILE 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4EDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 133Right-handed alpha
Helix 2
2
A
136 146Right-handed alpha
Helix 3
3
A
149 157Right-handed alpha
Helix 4
4
A
166 175Right-handed alpha
Helix 5
5
A
178 185Right-handed alpha
Helix 6
6
A
248 260Right-handed alpha
Helix 7
7
A
267 278Right-handed alpha
Helix 8
8
A
291 300Right-handed alpha
Helix 9
9
A
312 329Right-handed alpha
Helix 10
10
A
343 352Right-handed alpha
Helix 11
11
A
352 363Right-handed alpha
Helix 12
12
A
367 375Right-handed alpha
Helix 13
13
A
375 382Right-handed alpha
Helix 14
14
A
382 400Right-handed alpha
Helix 15
15
A
402 414Right-handed alpha
Helix 16
16
A
415 418Right-handed 310
Helix 17
17
A
420 428Right-handed alpha
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There are 3 sheets in PDB entry 4EDK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
204 210anti-parallel
Strand 3
A
216 222anti-parallel
Strand 4
A
231 233anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
197 199anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
262 265parallel
Strand 3
A
304 308parallel
Strand 4
A
332 336parallel
Strand 5
A
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il