Analysis of interatomic Contacts of Structural Units in PDB entry:
4EDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EDP entry

There are 2 chains in PDB entry 4EDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 33ASN 348
B
 LYS 33ASN 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4EDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 50Right-handed alpha
Helix 2
2
A
50 59Right-handed alpha
Helix 3
3
A
68 79Right-handed alpha
Helix 4
4
A
91 101Right-handed alpha
Helix 5
5
A
107 117Right-handed 310
Helix 6
6
A
121 128Right-handed alpha
Helix 7
7
A
144 147Right-handed 310
Helix 8
8
A
152 162Right-handed 310
Helix 9
9
A
174 187Right-handed alpha
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
A
195 206Right-handed alpha
Helix 12
12
A
215 225Right-handed alpha
Helix 13
13
A
235 245Right-handed alpha
Helix 14
14
A
272 284Right-handed alpha
Helix 15
15
A
285 297Right-handed alpha
Helix 16
16
A
318 323Right-handed alpha
Helix 17
17
A
328 348Right-handed alpha
Helix 18
18
B
42 50Right-handed alpha
Helix 19
19
B
50 59Right-handed alpha
Helix 20
20
B
68 79Right-handed alpha
Helix 21
21
B
91 100Right-handed alpha
Helix 22
22
B
107 117Right-handed 310
Helix 23
23
B
121 128Right-handed alpha
Helix 24
24
B
144 147Right-handed 310
Helix 25
25
B
152 162Right-handed 310
Helix 26
26
B
174 187Right-handed alpha
Helix 27
27
B
189 194Right-handed alpha
Helix 28
28
B
195 206Right-handed alpha
Helix 29
29
B
215 217Right-handed 310
Helix 30
30
B
218 225Right-handed alpha
Helix 31
31
B
235 245Right-handed alpha
Helix 32
32
B
272 284Right-handed alpha
Helix 33
33
B
285 297Right-handed alpha
Helix 34
34
B
318 323Right-handed alpha
Helix 35
35
B
328 348Right-handed alpha
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There are 4 sheets in PDB entry 4EDP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
34 38parallel
Strand 3
A
86 90parallel
Strand 4
A
259 266anti-parallel
Strand 5
A
132 142anti-parallel
Strand 6
A
230 234anti-parallel
Strand 7
A
165 168parallel
Strand 8
A
209 213parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
34 38parallel
Strand 3
A
86 90parallel
Strand 4
A
259 266anti-parallel
Strand 5
A
132 142anti-parallel
Strand 6
A
249 251anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
34 38parallel
Strand 3
B
86 90parallel
Strand 4
B
259 266anti-parallel
Strand 5
B
132 142anti-parallel
Strand 6
B
249 251anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
165 168parallel
Strand 3
B
230 234parallel
Strand 4
B
132 142anti-parallel
Strand 5
B
299 300anti-parallel
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