Analysis of interatomic Contacts of Structural Units in PDB entry:
4EED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EED entry

There are 4 chains in PDB entry 4EED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 26LYS 349
B
 ASP 26LYS 349
C
 ASP 26LYS 349
D
 ASP 26MET 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4EED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 56Right-handed 310
Helix 2
2
A
69 81Right-handed alpha
Helix 3
3
A
83 92Right-handed alpha
Helix 4
4
A
147 156Right-handed alpha
Helix 5
5
A
165 201Right-handed alpha
Helix 6
6
A
206 238Right-handed alpha
Helix 7
7
A
243 272Right-handed alpha
Helix 8
8
A
275 311Right-handed alpha
Helix 9
9
A
327 345Right-handed alpha
Helix 10
10
B
47 54Right-handed 310
Helix 11
11
B
69 80Right-handed alpha
Helix 12
12
B
83 92Right-handed alpha
Helix 13
13
B
147 156Right-handed alpha
Helix 14
14
B
165 201Right-handed alpha
Helix 15
15
B
206 238Right-handed alpha
Helix 16
16
B
243 272Right-handed alpha
Helix 17
17
B
275 302Right-handed alpha
Helix 18
18
B
303 311Right-handed alpha
Helix 19
19
B
327 345Right-handed alpha
Helix 20
20
C
47 55Right-handed 310
Helix 21
21
C
69 81Right-handed alpha
Helix 22
22
C
83 92Right-handed alpha
Helix 23
23
C
147 156Right-handed alpha
Helix 24
24
C
165 201Right-handed alpha
Helix 25
25
C
206 238Right-handed alpha
Helix 26
26
C
243 272Right-handed alpha
Helix 27
27
C
275 302Right-handed alpha
Helix 28
28
C
302 311Right-handed alpha
Helix 29
29
C
327 345Right-handed alpha
Helix 30
30
D
47 56Right-handed 310
Helix 31
31
D
69 81Right-handed alpha
Helix 32
32
D
83 92Right-handed alpha
Helix 33
33
D
147 156Right-handed alpha
Helix 34
34
D
165 201Right-handed alpha
Helix 35
35
D
206 238Right-handed alpha
Helix 36
36
D
243 272Right-handed alpha
Helix 37
37
D
275 302Right-handed alpha
Helix 38
38
D
302 311Right-handed alpha
Helix 39
39
D
327 345Right-handed alpha
Helix 40
40
E
47 56Right-handed 310
Helix 41
41
E
69 81Right-handed alpha
Helix 42
42
E
83 92Right-handed alpha
Helix 43
43
E
147 156Right-handed alpha
Helix 44
44
E
165 201Right-handed alpha
Helix 45
45
E
206 238Right-handed alpha
Helix 46
46
E
243 274Right-handed alpha
Helix 47
47
E
275 311Right-handed alpha
Helix 48
48
E
327 345Right-handed alpha
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There are 5 sheets in PDB entry 4EED. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
135 140parallel
Strand 4
A
121 132anti-parallel
Strand 5
A
105 116anti-parallel
Strand 6
A
98 101anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
28 31anti-parallel
Strand 3
B
62 65anti-parallel
Strand 4
B
135 140parallel
Strand 5
B
121 132anti-parallel
Strand 6
B
106 116anti-parallel
Strand 7
B
98 101anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 33first strand
Strand 2
C
60 65anti-parallel
Strand 3
C
135 140parallel
Strand 4
C
121 132anti-parallel
Strand 5
C
105 116anti-parallel
Strand 6
C
98 101anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 31first strand
Strand 2
D
60 65anti-parallel
Strand 3
D
135 138parallel
Strand 4
D
121 132anti-parallel
Strand 5
D
105 116anti-parallel
Strand 6
D
99 101anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 33first strand
Strand 2
E
60 65anti-parallel
Strand 3
E
135 140parallel
Strand 4
E
121 132anti-parallel
Strand 5
E
106 116anti-parallel
Strand 6
E
98 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il