Analysis of interatomic Contacts of Structural Units in PDB entry:
4EEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EEX entry

There are 2 chains in PDB entry 4EEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 339
B
 MET 1LEU 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4EEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 48Right-handed alpha
Helix 2
2
A
94 99Right-handed alpha
Helix 3
3
A
101 105Right-handed 310
Helix 4
4
A
128 130Right-handed 310
Helix 5
5
A
138 147Right-handed alpha
Helix 6
6
A
147 159Right-handed alpha
Helix 7
7
A
173 186Right-handed alpha
Helix 8
8
A
197 207Right-handed alpha
Helix 9
9
A
219 229Right-handed alpha
Helix 10
10
A
242 252Right-handed alpha
Helix 11
11
A
272 279Right-handed alpha
Helix 12
12
A
290 303Right-handed alpha
Helix 13
13
A
314 316Right-handed 310
Helix 14
14
A
317 327Right-handed alpha
Helix 15
15
B
39 47Right-handed alpha
Helix 16
16
B
94 99Right-handed alpha
Helix 17
17
B
101 105Right-handed 310
Helix 18
18
B
128 130Right-handed 310
Helix 19
19
B
138 146Right-handed alpha
Helix 20
20
B
147 160Right-handed alpha
Helix 21
21
B
174 186Right-handed alpha
Helix 22
22
B
197 207Right-handed alpha
Helix 23
23
B
219 229Right-handed alpha
Helix 24
24
B
242 252Right-handed alpha
Helix 25
25
B
273 280Right-handed alpha
Helix 26
26
B
290 303Right-handed alpha
Helix 27
27
B
314 316Right-handed 310
Helix 28
28
B
317 327Right-handed alpha
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There are 9 sheets in PDB entry 4EEX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
14 18anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
28 37anti-parallel
Strand 4
A
122 126anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
28 37anti-parallel
Strand 4
A
333 337anti-parallel
Strand 5
A
310 313parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
109 110anti-parallel
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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
190 195parallel
Strand 3
A
166 170parallel
Strand 4
A
233 238parallel
Strand 5
A
253 261parallel
Strand 6
A
282 285parallel
Strand 7
B
282 285anti-parallel
Strand 8
B
253 261parallel
Strand 9
B
233 238parallel
Strand 10
B
166 170parallel
Strand 11
B
190 195parallel
Strand 12
B
211 214parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
B
269 272anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
14 18anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
61 69anti-parallel
Strand 3
B
28 37anti-parallel
Strand 4
B
122 126anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
61 69anti-parallel
Strand 3
B
28 37anti-parallel
Strand 4
B
333 337anti-parallel
Strand 5
B
310 313parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il