Analysis of interatomic Contacts of Structural Units in PDB entry:
4EF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EF6 entry

There are 2 chains in PDB entry 4EF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 291
B
 ALA 2GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4EF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
44 56Right-handed alpha
Helix 3
3
A
69 73Right-handed 310
Helix 4
5
A
85 96Right-handed alpha
Helix 5
6
A
105 110Right-handed alpha
Helix 6
7
A
121 130Right-handed 310
Helix 7
8
A
134 151Right-handed alpha
Helix 8
9
A
161 175Right-handed alpha
Helix 9
10
A
196 202Right-handed 310
Helix 10
11
A
203 210Right-handed alpha
Helix 11
12
A
211 224Right-handed alpha
Helix 12
13
A
227 241Right-handed alpha
Helix 13
14
B
16 30Right-handed alpha
Helix 14
15
B
44 56Right-handed alpha
Helix 15
16
B
85 96Right-handed alpha
Helix 16
17
B
105 110Right-handed alpha
Helix 17
18
B
121 130Right-handed 310
Helix 18
19
B
134 151Right-handed alpha
Helix 19
20
B
161 175Right-handed alpha
Helix 20
21
B
196 202Right-handed 310
Helix 21
22
B
203 210Right-handed alpha
Helix 22
23
B
211 224Right-handed alpha
Helix 23
24
B
227 241Right-handed alpha
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There are 5 sheets in PDB entry 4EF6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
100 102parallel
Strand 3
A
60 66parallel
Strand 4
A
33 39parallel
Strand 5
A
154 158parallel
Strand 6
A
180 184parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
B
117 119anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 254first strand
Strand 2
A
265 274anti-parallel
Strand 3
A
277 286anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
100 102parallel
Strand 3
B
60 66parallel
Strand 4
B
33 39parallel
Strand 5
B
154 158parallel
Strand 6
B
180 184parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 253first strand
Strand 2
B
264 274anti-parallel
Strand 3
B
277 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il