Analysis of interatomic Contacts of Structural Units in PDB entry:
4EGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EGP entry

There are 2 chains in PDB entry 4EGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17ALA 409
B
 THR 17ALA 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 4EGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 33Right-handed alpha
Helix 2
2
A
33 44Right-handed alpha
Helix 3
3
A
60 70Right-handed alpha
Helix 4
4
A
105 116Right-handed alpha
Helix 5
5
A
117 141Right-handed alpha
Helix 6
6
A
153 165Right-handed alpha
Helix 7
7
A
170 172Right-handed 310
Helix 8
8
A
173 185Right-handed alpha
Helix 9
9
A
189 198Right-handed alpha
Helix 10
10
A
199 210Right-handed alpha
Helix 11
11
A
211 215Right-handed 310
Helix 12
12
A
219 231Right-handed alpha
Helix 13
13
A
236 249Right-handed alpha
Helix 14
14
A
250 267Right-handed alpha
Helix 15
15
A
267 277Right-handed alpha
Helix 16
16
A
280 293Right-handed alpha
Helix 17
17
A
322 328Right-handed alpha
Helix 18
18
A
360 378Right-handed alpha
Helix 19
19
B
27 33Right-handed alpha
Helix 20
20
B
34 44Right-handed alpha
Helix 21
21
B
60 69Right-handed alpha
Helix 22
22
B
105 116Right-handed alpha
Helix 23
23
B
117 130Right-handed alpha
Helix 24
24
B
132 141Right-handed alpha
Helix 25
25
B
159 165Right-handed alpha
Helix 26
26
B
173 185Right-handed alpha
Helix 27
27
B
191 197Right-handed alpha
Helix 28
28
B
199 211Right-handed alpha
Helix 29
29
B
212 215Right-handed 310
Helix 30
30
B
220 226Right-handed alpha
Helix 31
31
B
236 250Right-handed alpha
Helix 32
32
B
250 265Right-handed alpha
Helix 33
33
B
267 277Right-handed alpha
Helix 34
34
B
281 293Right-handed alpha
Helix 35
35
B
323 328Right-handed alpha
Helix 36
36
B
360 365Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4EGP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
48 50parallel
Strand 3
A
55 58anti-parallel
Strand 4
A
318 321parallel
Strand 5
A
298 302anti-parallel
Strand 6
A
74 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
379 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
311 313anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
398 401anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
48 50parallel
Strand 3
B
55 58anti-parallel
Strand 4
B
318 322parallel
Strand 5
B
297 302anti-parallel
Strand 6
B
74 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
311 313anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 385first strand
Strand 2
B
404 407anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 392first strand
Strand 2
B
397 401anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il