Analysis of interatomic Contacts of Structural Units in PDB entry:
4EJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EJI entry

There is 1 chain in PDB entry 4EJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31ARG 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4EJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
83 92Right-handed alpha
Helix 4
4
A
104 112Right-handed alpha
Helix 5
5
A
120 138Right-handed alpha
Helix 6
6
A
142 162Right-handed alpha
Helix 7
7
A
170 188Right-handed alpha
Helix 8
8
A
195 212Right-handed alpha
Helix 9
9
A
214 228Right-handed alpha
Helix 10
10
A
232 258Right-handed alpha
Helix 11
11
A
266 278Right-handed alpha
Helix 12
12
A
287 320Right-handed alpha
Helix 13
13
A
320 335Right-handed alpha
Helix 14
14
A
342 348Right-handed 310
Helix 15
15
A
349 364Right-handed alpha
Helix 16
16
A
394 400Right-handed alpha
Helix 17
17
A
412 417Right-handed 310
Helix 18
18
A
441 459Right-handed alpha
Helix 19
19
A
467 471Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4EJI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
390 393parallel
Strand 4
A
372 373anti-parallel
Strand 5
A
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 385anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 463first strand
Strand 2
A
490 493anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 478first strand
Strand 2
A
482 483anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il