Analysis of interatomic Contacts of Structural Units in PDB entry:
4EJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EJM entry

There is 1 chain in PDB entry 4EJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -2PRO 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4EJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 45Right-handed alpha
Helix 2
2
A
91 96Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
137 140Right-handed 310
Helix 5
5
A
141 156Right-handed alpha
Helix 6
6
A
169 182Right-handed alpha
Helix 7
7
A
193 203Right-handed alpha
Helix 8
8
A
215 222Right-handed alpha
Helix 9
9
A
240 250Right-handed alpha
Helix 10
10
A
272 279Right-handed alpha
Helix 11
11
A
292 302Right-handed alpha
Helix 12
12
A
307 309Right-handed 310
Helix 13
13
A
319 326Right-handed alpha
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There are 5 sheets in PDB entry 4EJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 18first strand
Strand 2
A
0 8anti-parallel
Strand 3
A
54 55anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
26 36anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
79 82anti-parallel
Strand 5
A
127 130anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
26 36anti-parallel
Strand 3
A
334 337anti-parallel
Strand 4
A
311 315parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
106 107anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
186 190parallel
Strand 3
A
162 166parallel
Strand 4
A
231 236parallel
Strand 5
A
251 259parallel
Strand 6
A
282 285parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il