Analysis of interatomic Contacts of Structural Units in PDB entry:
4EPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EPH entry

There is 1 chain in PDB entry 4EPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 32ILE 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 4EPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 69Right-handed alpha
Helix 2
2
A
73 90Right-handed alpha
Helix 3
3
A
90 106Right-handed alpha
Helix 4
4
A
112 123Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
147 168Right-handed alpha
Helix 7
7
A
179 184Right-handed alpha
Helix 8
8
A
185 193Right-handed alpha
Helix 9
9
A
199 207Right-handed alpha
Helix 10
10
A
214 219Right-handed 310
Helix 11
11
A
265 277Right-handed alpha
Helix 12
12
A
287 294Right-handed 310
Helix 13
13
A
295 309Right-handed alpha
Helix 14
14
A
311 321Right-handed alpha
Helix 15
15
A
334 344Right-handed alpha
Helix 16
16
A
372 375Right-handed 310
Helix 17
17
A
376 394Right-handed alpha
Helix 18
18
A
407 412Right-handed alpha
Helix 19
19
A
420 440Right-handed alpha
Helix 20
20
A
452 459Right-handed alpha
Helix 21
21
A
462 480Right-handed alpha
Helix 22
22
A
506 519Right-handed alpha
Helix 23
23
A
524 548Right-handed alpha
Helix 24
24
A
552 566Right-handed alpha
Helix 25
25
A
571 575Right-handed 310
Helix 26
26
A
576 583Right-handed alpha
Helix 27
27
A
632 653Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4EPH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
242 247anti-parallel
Strand 4
A
324 327parallel
Strand 5
A
356 360parallel
Strand 6
A
366 370anti-parallel
Strand 7
A
134 137anti-parallel
Strand 8
A
597 601anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
209 211anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
233 236anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 448first strand
Strand 2
A
621 627anti-parallel
Strand 3
A
610 616anti-parallel
Strand 4
A
587 590parallel
Strand 5
A
485 490parallel
Strand 6
A
499 502anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il