Analysis of interatomic Contacts of Structural Units in PDB entry:
4ESJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ESJ entry

There are 10 chains in PDB entry 4ESJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -1LEU 254
B
 MET 1LEU 254
C
 C 1 G 4
C
 T 6 G 10
D
 C 1 G 4
D
 T 6 G 10
E
 G 3 G 4
E
 T 6 G 10
F
 C 1 G 4
F
 T 6 C 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4ESJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
18 32Right-handed alpha
Helix 3
3
A
81 90Right-handed alpha
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
119 121Right-handed 310
Helix 6
6
A
146 148Right-handed 310
Helix 7
7
A
149 153Right-handed 310
Helix 8
8
A
164 175Right-handed alpha
Helix 9
9
A
176 181Right-handed 310
Helix 10
10
A
182 199Right-handed alpha
Helix 11
11
A
206 211Right-handed alpha
Helix 12
12
A
212 220Right-handed alpha
Helix 13
13
A
225 240Right-handed alpha
Helix 14
14
B
6 13Right-handed alpha
Helix 15
15
B
18 32Right-handed alpha
Helix 16
16
B
81 90Right-handed alpha
Helix 17
17
B
114 118Right-handed 310
Helix 18
18
B
119 121Right-handed 310
Helix 19
19
B
146 148Right-handed 310
Helix 20
20
B
149 153Right-handed 310
Helix 21
21
B
164 175Right-handed alpha
Helix 22
22
B
176 181Right-handed 310
Helix 23
23
B
182 199Right-handed alpha
Helix 24
24
B
206 211Right-handed alpha
Helix 25
25
B
212 220Right-handed alpha
Helix 26
26
B
225 240Right-handed alpha
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There are 6 sheets in PDB entry 4ESJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
53 55anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
95 101parallel
Strand 5
A
107 113anti-parallel
Strand 6
A
154 158anti-parallel
Strand 7
A
161 162anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
138 144anti-parallel
Strand 3
A
123 129anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
250 253anti-parallel
Strand 3
A
243 245anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
54 55anti-parallel
Strand 3
B
62 69anti-parallel
Strand 4
B
95 101parallel
Strand 5
B
107 113anti-parallel
Strand 6
B
154 158anti-parallel
Strand 7
B
161 162anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 80first strand
Strand 2
B
140 144anti-parallel
Strand 3
B
123 125anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
250 253anti-parallel
Strand 3
B
243 245anti-parallel
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