Analysis of interatomic Contacts of Structural Units in PDB entry:
4EYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4EYE entry

There are 2 chains in PDB entry 4EYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3PRO 321
B
 GLY -1PRO 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4EYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 13Right-handed 310
Helix 2
2
A
40 48Right-handed alpha
Helix 3
3
A
100 102Right-handed 310
Helix 4
4
A
112 120Right-handed alpha
Helix 5
5
A
121 132Right-handed alpha
Helix 6
6
A
149 162Right-handed alpha
Helix 7
7
A
172 174Right-handed 310
Helix 8
8
A
175 183Right-handed alpha
Helix 9
9
A
193 202Right-handed alpha
Helix 10
10
A
219 225Right-handed alpha
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
261 269Right-handed alpha
Helix 13
13
A
271 286Right-handed alpha
Helix 14
14
A
300 310Right-handed alpha
Helix 15
15
B
10 13Right-handed 310
Helix 16
16
B
40 48Right-handed alpha
Helix 17
17
B
73 77Right-handed 310
Helix 18
18
B
100 102Right-handed 310
Helix 19
19
B
112 120Right-handed alpha
Helix 20
20
B
121 132Right-handed alpha
Helix 21
21
B
149 162Right-handed alpha
Helix 22
22
B
172 174Right-handed 310
Helix 23
23
B
175 183Right-handed alpha
Helix 24
24
B
193 202Right-handed alpha
Helix 25
25
B
220 225Right-handed alpha
Helix 26
26
B
249 253Right-handed 310
Helix 27
27
B
261 269Right-handed alpha
Helix 28
28
B
271 286Right-handed alpha
Helix 29
29
B
300 310Right-handed alpha
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There are 8 sheets in PDB entry 4EYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 6first strand
Strand 2
A
15 21anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
83 87anti-parallel
Strand 5
A
104 106anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
316 320anti-parallel
Strand 4
A
292 297parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
165 170parallel
Strand 3
A
141 144parallel
Strand 4
A
207 212parallel
Strand 5
A
226 234parallel
Strand 6
A
256 259parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
0 6first strand
Strand 2
B
15 21anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
30 38anti-parallel
Strand 3
B
64 71anti-parallel
Strand 4
B
83 87anti-parallel
Strand 5
B
104 106anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
30 38anti-parallel
Strand 3
B
316 320anti-parallel
Strand 4
B
292 297parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
165 170parallel
Strand 3
B
141 144parallel
Strand 4
B
207 212parallel
Strand 5
B
226 234parallel
Strand 6
B
256 259parallel
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