Analysis of interatomic Contacts of Structural Units in PDB entry:
4F07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F07 entry

There are 12 chains in PDB entry 4F07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 14	LEU 169
B	THR 14	LEU 169
C	THR 14	LEU 169
D	THR 14	LEU 169
E	ASN 15	LEU 169
F	THR 14	LEU 169
G	THR 14	LEU 169
H	SER 13	LEU 169
I	ASN 15	LEU 169
J	THR 14	LEU 169
K	THR 14	LEU 169
L	ASN 15	LEU 169

There are 43 helices in PDB entry 4F07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	21	Right-handed alpha
Helix 2	2	A	64	73	Right-handed alpha
Helix 3	3	A	82	84	Right-handed 310
Helix 4	4	A	85	92	Right-handed alpha
Helix 5	5	B	15	20	Right-handed alpha
Helix 6	6	B	21	23	Right-handed 310
Helix 7	7	B	64	73	Right-handed alpha
Helix 8	8	B	82	84	Right-handed 310
Helix 9	9	B	85	92	Right-handed alpha
Helix 10	10	C	15	21	Right-handed alpha
Helix 11	11	C	64	73	Right-handed alpha
Helix 12	12	C	85	92	Right-handed alpha
Helix 13	13	D	15	21	Right-handed alpha
Helix 14	14	D	64	73	Right-handed alpha
Helix 15	15	D	85	93	Right-handed alpha
Helix 16	16	E	16	21	Right-handed alpha
Helix 17	17	E	64	73	Right-handed alpha
Helix 18	18	E	82	84	Right-handed 310
Helix 19	19	E	85	92	Right-handed alpha
Helix 20	20	F	15	21	Right-handed alpha
Helix 21	21	F	64	73	Right-handed alpha
Helix 22	22	F	82	84	Right-handed 310
Helix 23	23	F	85	92	Right-handed alpha
Helix 24	24	G	15	21	Right-handed alpha
Helix 25	25	G	64	73	Right-handed alpha
Helix 26	26	G	82	84	Right-handed 310
Helix 27	27	G	85	92	Right-handed alpha
Helix 28	28	H	14	22	Right-handed alpha
Helix 29	29	H	64	73	Right-handed alpha
Helix 30	30	H	85	92	Right-handed alpha
Helix 31	31	I	16	21	Right-handed alpha
Helix 32	32	I	64	73	Right-handed alpha
Helix 33	33	I	85	92	Right-handed alpha
Helix 34	34	J	15	21	Right-handed alpha
Helix 35	35	J	64	73	Right-handed alpha
Helix 36	36	J	85	92	Right-handed alpha
Helix 37	37	K	15	21	Right-handed alpha
Helix 38	38	K	64	73	Right-handed alpha
Helix 39	39	K	85	92	Right-handed alpha
Helix 40	40	L	16	22	Right-handed alpha
Helix 41	41	L	64	73	Right-handed alpha
Helix 42	42	L	82	84	Right-handed 310
Helix 43	43	L	85	92	Right-handed alpha

There are 36 sheets in PDB entry 4F07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	161	164	anti-parallel
Strand 4	D	167	168	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	119	131	anti-parallel
Strand 5	A	134	145	anti-parallel
Strand 6	A	56	61	anti-parallel
Strand 7	A	48	51	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	112	114	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	156	158	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	119	131	anti-parallel
Strand 5	B	134	145	anti-parallel
Strand 6	B	56	62	anti-parallel
Strand 7	B	48	51	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	112	114	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	C	167	168	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	C	161	164	anti-parallel
Strand 3	C	156	158	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	44	first strand
Strand 2	C	28	33	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	119	131	anti-parallel
Strand 5	C	134	145	anti-parallel
Strand 6	C	56	61	anti-parallel
Strand 7	C	48	51	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	112	114	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	119	131	anti-parallel
Strand 5	D	134	145	anti-parallel
Strand 6	D	56	61	anti-parallel
Strand 7	D	48	51	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	112	114	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	28	33	anti-parallel
Strand 3	E	75	80	anti-parallel
Strand 4	E	119	131	anti-parallel
Strand 5	E	134	145	anti-parallel
Strand 6	E	56	61	anti-parallel
Strand 7	E	48	51	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	112	114	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	158	first strand
Strand 2	E	161	164	anti-parallel
Strand 3	F	167	168	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	F	161	164	anti-parallel
Strand 3	F	156	158	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	44	first strand
Strand 2	F	28	33	anti-parallel
Strand 3	F	75	80	anti-parallel
Strand 4	F	119	131	anti-parallel
Strand 5	F	134	145	anti-parallel
Strand 6	F	56	62	anti-parallel
Strand 7	F	48	51	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	107	first strand
Strand 2	F	112	114	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	26	first strand
Strand 2	G	156	158	anti-parallel
Strand 3	G	161	164	anti-parallel
Strand 4	H	167	168	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	44	first strand
Strand 2	G	28	33	anti-parallel
Strand 3	G	75	80	anti-parallel
Strand 4	G	119	131	anti-parallel
Strand 5	G	134	145	anti-parallel
Strand 6	G	56	61	anti-parallel
Strand 7	G	48	51	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	107	first strand
Strand 2	G	112	114	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	156	158	anti-parallel
Strand 3	H	161	163	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	44	first strand
Strand 2	H	28	33	anti-parallel
Strand 3	H	75	80	anti-parallel
Strand 4	H	119	131	anti-parallel
Strand 5	H	134	145	anti-parallel
Strand 6	H	56	61	anti-parallel
Strand 7	H	48	51	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	107	first strand
Strand 2	H	112	114	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	26	first strand
Strand 2	I	156	158	anti-parallel
Strand 3	I	161	164	anti-parallel
Strand 4	J	167	168	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	44	first strand
Strand 2	I	28	33	anti-parallel
Strand 3	I	75	80	anti-parallel
Strand 4	I	119	131	anti-parallel
Strand 5	I	134	145	anti-parallel
Strand 6	I	56	62	anti-parallel
Strand 7	I	48	51	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	105	107	first strand
Strand 2	I	112	114	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	168	first strand
Strand 2	J	161	164	anti-parallel
Strand 3	J	156	158	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	44	first strand
Strand 2	J	28	33	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	119	131	anti-parallel
Strand 5	J	134	145	anti-parallel
Strand 6	J	56	61	anti-parallel
Strand 7	J	48	51	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	105	107	first strand
Strand 2	J	112	114	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	44	first strand
Strand 2	K	28	33	anti-parallel
Strand 3	K	75	80	anti-parallel
Strand 4	K	119	131	anti-parallel
Strand 5	K	134	145	anti-parallel
Strand 6	K	56	61	anti-parallel
Strand 7	K	48	51	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	105	107	first strand
Strand 2	K	112	114	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	156	158	first strand
Strand 2	K	161	164	anti-parallel
Strand 3	L	167	168	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	167	168	first strand
Strand 2	L	161	164	anti-parallel
Strand 3	L	156	158	anti-parallel
Strand 4	L	25	26	anti-parallel

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There are 7 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	39	44	first strand
Strand 2	L	28	33	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	119	131	anti-parallel
Strand 5	L	134	145	anti-parallel
Strand 6	L	56	61	anti-parallel
Strand 7	L	48	51	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	105	107	first strand
Strand 2	L	112	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F07

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F07