Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F0A entry

There are 2 chains in PDB entry 4F0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 35ALA 152
B
 THR 32ALA 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4F0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 44Right-handed 310
Helix 2
2
A
61 70Right-handed alpha
Helix 3
3
A
72 79Right-handed alpha
Helix 4
4
A
83 93Right-handed alpha
Helix 5
5
A
107 125Right-handed alpha
Helix 6
6
A
130 134Right-handed 310
Helix 7
7
B
33 59Right-handed alpha
Helix 8
8
B
71 76Right-handed alpha
Helix 9
9
B
83 107Right-handed alpha
Helix 10
10
B
136 149Right-handed alpha
Helix 11
11
B
156 176Right-handed alpha
Helix 12
12
B
201 215Right-handed alpha
Helix 13
13
B
236 242Right-handed alpha
Helix 14
14
B
284 289Right-handed alpha
Helix 15
15
B
289 295Right-handed alpha
Helix 16
16
B
296 299Right-handed 310
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There are 5 sheets in PDB entry 4F0A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
50 51anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
128 130anti-parallel
Strand 3
B
193 198parallel
Strand 4
B
178 183anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
251 252parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
268 269anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
327 338anti-parallel
Strand 3
B
301 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il