Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F0D entry

There are 2 chains in PDB entry 4F0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4GLN 273
B
 MET 4GLN 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4F0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
16 33Right-handed alpha
Helix 3
3
A
35 40Right-handed alpha
Helix 4
4
A
44 48Right-handed 310
Helix 5
5
A
54 64Right-handed alpha
Helix 6
6
A
67 73Right-handed alpha
Helix 7
7
A
79 90Right-handed alpha
Helix 8
8
A
102 112Right-handed alpha
Helix 9
9
A
133 143Right-handed alpha
Helix 10
10
A
155 157Right-handed 310
Helix 11
11
A
158 166Right-handed alpha
Helix 12
12
A
186 192Right-handed alpha
Helix 13
13
A
259 261Right-handed 310
Helix 14
14
B
7 16Right-handed alpha
Helix 15
15
B
16 33Right-handed alpha
Helix 16
16
B
57 64Right-handed alpha
Helix 17
17
B
81 90Right-handed alpha
Helix 18
18
B
101 106Right-handed alpha
Helix 19
19
B
155 157Right-handed 310
Helix 20
20
B
158 164Right-handed alpha
Helix 21
21
B
186 191Right-handed alpha
Helix 22
22
B
259 263Right-handed 310
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There are 5 sheets in PDB entry 4F0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
124 130anti-parallel
Strand 3
A
263 272anti-parallel
Strand 4
A
208 218anti-parallel
Strand 5
A
147 153anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
124 130anti-parallel
Strand 3
A
263 272anti-parallel
Strand 4
A
208 218anti-parallel
Strand 5
A
197 198anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
255 257anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
125 127anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
209 215anti-parallel
Strand 3
B
265 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il