Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F0E entry

There are 4 chains in PDB entry 4F0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 458	THR 655
B	ASN 459	ALA 656
C	ASN 459	ALA 656
D	ASN 459	ALA 656

There are 18 helices in PDB entry 4F0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	481	495	Right-handed alpha
Helix 2	2	A	509	526	Right-handed alpha
Helix 3	3	A	543	551	Right-handed alpha
Helix 4	4	A	573	578	Right-handed alpha
Helix 5	5	B	481	492	Right-handed alpha
Helix 6	6	B	509	526	Right-handed alpha
Helix 7	7	B	543	551	Right-handed alpha
Helix 8	8	B	553	557	Right-handed 310
Helix 9	9	B	573	578	Right-handed alpha
Helix 10	10	C	481	495	Right-handed alpha
Helix 11	11	C	509	526	Right-handed alpha
Helix 12	12	C	540	542	Right-handed 310
Helix 13	13	C	543	551	Right-handed alpha
Helix 14	14	C	573	579	Right-handed alpha
Helix 15	15	D	481	492	Right-handed alpha
Helix 16	16	D	509	526	Right-handed alpha
Helix 17	17	D	543	551	Right-handed alpha
Helix 18	18	D	573	578	Right-handed alpha

There are 11 sheets in PDB entry 4F0E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	476	first strand
Strand 2	A	499	508	anti-parallel
Strand 3	A	646	655	anti-parallel
Strand 4	A	591	599	anti-parallel
Strand 5	A	532	539	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	571	first strand
Strand 2	A	637	640	anti-parallel
Strand 3	A	627	629	anti-parallel
Strand 4	A	603	605	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	617	first strand
Strand 2	A	620	624	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	476	first strand
Strand 2	B	499	508	anti-parallel
Strand 3	B	646	655	anti-parallel
Strand 4	B	591	599	anti-parallel
Strand 5	B	532	539	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	571	first strand
Strand 2	B	637	640	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	605	first strand
Strand 2	B	627	629	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	476	first strand
Strand 2	C	499	508	anti-parallel
Strand 3	C	646	655	anti-parallel
Strand 4	C	591	599	anti-parallel
Strand 5	C	532	538	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	571	first strand
Strand 2	C	637	640	anti-parallel
Strand 3	C	627	629	anti-parallel
Strand 4	C	603	605	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	476	first strand
Strand 2	D	499	508	anti-parallel
Strand 3	D	646	655	anti-parallel
Strand 4	D	591	599	anti-parallel
Strand 5	D	532	538	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	568	571	first strand
Strand 2	D	637	640	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	605	first strand
Strand 2	D	627	629	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0E