Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F0F entry

There is 1 chain in PDB entry 4F0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1017LEU 1292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4F0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1065 1070Right-handed alpha
Helix 2
2
A
1072 1083Right-handed alpha
Helix 3
3
A
1112 1119Right-handed alpha
Helix 4
4
A
1125 1145Right-handed alpha
Helix 5
5
A
1156 1158Right-handed 310
Helix 6
6
A
1199 1203Right-handed 310
Helix 7
7
A
1211 1229Right-handed alpha
Helix 8
8
A
1239 1250Right-handed alpha
Helix 9
9
A
1261 1272Right-handed alpha
Helix 10
10
A
1275 1279Right-handed 310
Helix 11
11
A
1281 1291Right-handed alpha
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There are 3 sheets in PDB entry 4F0F. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1026 1031first strand
Strand 2
A
1040 1045anti-parallel
Strand 3
A
1051 1056anti-parallel
Strand 4
A
1102 1106anti-parallel
Strand 5
A
1093 1097anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1160 1162first strand
Strand 2
A
1173 1175anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1189first strand
Strand 2
A
1209 1210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il