Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F0M entry

There are 4 chains in PDB entry 4F0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 27GLY 180
A
 THR 182ASN 459
A
 GLY 461THR 474
B
 MET 501TYR 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4F0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 70Right-handed alpha
Helix 2
2
A
78 84Right-handed 310
Helix 3
3
A
85 90Right-handed 310
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
121 131Right-handed alpha
Helix 6
6
A
150 155Right-handed alpha
Helix 7
7
A
163 172Right-handed alpha
Helix 8
8
A
190 205Right-handed alpha
Helix 9
9
A
222 242Right-handed alpha
Helix 10
10
A
255 269Right-handed alpha
Helix 11
11
A
281 295Right-handed alpha
Helix 12
12
A
318 330Right-handed alpha
Helix 13
13
A
346 359Right-handed alpha
Helix 14
14
A
365 369Right-handed 310
Helix 15
15
A
391 393Right-handed 310
Helix 16
16
A
394 403Right-handed alpha
Helix 17
17
A
411 416Right-handed alpha
Helix 18
18
A
420 441Right-handed alpha
Helix 19
19
A
444 458Right-handed alpha
Helix 20
20
A
460 473Right-handed alpha
Helix 21
21
B
515 529Right-handed alpha
Helix 22
22
B
561 575Right-handed alpha
Helix 23
23
B
629 632Right-handed 310
Helix 24
24
B
633 637Right-handed 310
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There are 5 sheets in PDB entry 4F0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 98first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
139 148anti-parallel
Strand 5
A
316 317parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
407 409parallel
Strand 3
A
383 387parallel
Strand 4
A
333 335parallel
Strand 5
A
298 302parallel
Strand 6
A
273 277parallel
Strand 7
A
246 250parallel
Strand 8
A
208 210parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
374 375anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 550first strand
Strand 2
B
532 538anti-parallel
Strand 3
B
579 586anti-parallel
Strand 4
B
593 601anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
609 615first strand
Strand 2
B
621 627anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il