Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F0P entry

There are 4 chains in PDB entry 4F0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	LEU 456
B	LYS 5	LEU 456
C	ILE 8	LEU 456
D	LYS 5	LEU 456

There are 68 helices in PDB entry 4F0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	19	Right-handed alpha
Helix 2	2	A	48	53	Right-handed alpha
Helix 3	3	A	107	109	Right-handed 310
Helix 4	4	A	129	143	Right-handed alpha
Helix 5	5	A	146	153	Right-handed alpha
Helix 6	6	A	221	229	Right-handed alpha
Helix 7	7	A	233	237	Right-handed 310
Helix 8	8	A	242	252	Right-handed alpha
Helix 9	9	A	255	260	Right-handed alpha
Helix 10	10	A	270	275	Right-handed alpha
Helix 11	11	A	280	294	Right-handed alpha
Helix 12	12	A	296	314	Right-handed alpha
Helix 13	13	A	366	375	Right-handed alpha
Helix 14	14	A	392	402	Right-handed alpha
Helix 15	15	A	410	426	Right-handed alpha
Helix 16	16	A	429	441	Right-handed alpha
Helix 17	17	A	449	456	Right-handed 310
Helix 18	18	B	6	18	Right-handed alpha
Helix 19	19	B	48	53	Right-handed alpha
Helix 20	20	B	54	58	Right-handed 310
Helix 21	21	B	107	109	Right-handed 310
Helix 22	22	B	129	143	Right-handed alpha
Helix 23	23	B	146	153	Right-handed alpha
Helix 24	24	B	221	229	Right-handed alpha
Helix 25	25	B	233	237	Right-handed 310
Helix 26	26	B	242	252	Right-handed alpha
Helix 27	27	B	255	260	Right-handed alpha
Helix 28	28	B	280	293	Right-handed alpha
Helix 29	29	B	297	316	Right-handed alpha
Helix 30	30	B	366	375	Right-handed alpha
Helix 31	31	B	392	402	Right-handed alpha
Helix 32	32	B	410	426	Right-handed alpha
Helix 33	33	B	429	440	Right-handed alpha
Helix 34	34	B	449	455	Right-handed 310
Helix 35	35	C	9	17	Right-handed alpha
Helix 36	36	C	48	53	Right-handed alpha
Helix 37	37	C	107	109	Right-handed 310
Helix 38	38	C	129	144	Right-handed alpha
Helix 39	39	C	146	153	Right-handed alpha
Helix 40	40	C	221	228	Right-handed alpha
Helix 41	41	C	233	237	Right-handed 310
Helix 42	42	C	242	251	Right-handed alpha
Helix 43	43	C	270	275	Right-handed alpha
Helix 44	44	C	280	293	Right-handed alpha
Helix 45	45	C	296	314	Right-handed alpha
Helix 46	46	C	366	377	Right-handed alpha
Helix 47	47	C	392	402	Right-handed alpha
Helix 48	48	C	410	423	Right-handed alpha
Helix 49	49	C	429	437	Right-handed alpha
Helix 50	50	C	449	455	Right-handed 310
Helix 51	51	D	6	19	Right-handed alpha
Helix 52	52	D	48	53	Right-handed alpha
Helix 53	53	D	129	143	Right-handed alpha
Helix 54	54	D	146	151	Right-handed alpha
Helix 55	55	D	221	229	Right-handed alpha
Helix 56	56	D	234	238	Right-handed 310
Helix 57	57	D	242	251	Right-handed alpha
Helix 58	58	D	252	254	Right-handed 310
Helix 59	59	D	255	260	Right-handed alpha
Helix 60	60	D	270	275	Right-handed alpha
Helix 61	61	D	280	293	Right-handed alpha
Helix 62	62	D	297	316	Right-handed alpha
Helix 63	63	D	366	375	Right-handed alpha
Helix 64	64	D	392	402	Right-handed alpha
Helix 65	65	D	410	425	Right-handed alpha
Helix 66	66	D	429	437	Right-handed alpha
Helix 67	67	D	440	444	Right-handed 310
Helix 68	68	D	449	454	Right-handed 310

There are 25 sheets in PDB entry 4F0P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	218	220	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	45	47	anti-parallel
Strand 3	A	28	30	parallel
Strand 4	A	171	193	anti-parallel
Strand 5	A	156	164	anti-parallel
Strand 6	A	85	89	parallel
Strand 7	A	67	69	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	45	47	anti-parallel
Strand 3	A	28	30	parallel
Strand 4	A	171	193	anti-parallel
Strand 5	A	200	210	anti-parallel
Strand 6	A	111	115	anti-parallel
Strand 7	A	104	106	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	80	81	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	D	175	194	parallel
Strand 3	D	156	161	anti-parallel
Strand 4	D	85	89	parallel
Strand 5	D	67	69	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	45	47	anti-parallel
Strand 3	D	28	30	parallel
Strand 4	D	175	194	anti-parallel
Strand 5	D	199	210	anti-parallel
Strand 6	D	111	115	anti-parallel
Strand 7	D	104	106	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	323	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	347	357	anti-parallel
Strand 4	A	382	387	parallel
Strand 5	A	406	409	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	390	391	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	218	220	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	45	47	anti-parallel
Strand 3	B	28	30	parallel
Strand 4	B	175	193	anti-parallel
Strand 5	B	156	161	anti-parallel
Strand 6	B	85	89	parallel
Strand 7	B	67	69	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	45	47	anti-parallel
Strand 3	B	28	30	parallel
Strand 4	B	175	193	anti-parallel
Strand 5	B	200	210	anti-parallel
Strand 6	B	111	115	anti-parallel
Strand 7	B	104	106	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	80	81	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	C	175	193	parallel
Strand 3	C	156	160	anti-parallel
Strand 4	C	85	89	parallel
Strand 5	C	67	69	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	45	47	anti-parallel
Strand 3	C	28	30	parallel
Strand 4	C	175	193	anti-parallel
Strand 5	C	200	210	anti-parallel
Strand 6	C	111	115	anti-parallel
Strand 7	C	104	106	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	324	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	347	357	anti-parallel
Strand 4	B	381	387	parallel
Strand 5	B	406	409	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	390	391	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	219	220	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	80	82	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	169	171	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	323	first strand
Strand 2	C	334	341	anti-parallel
Strand 3	C	348	357	anti-parallel
Strand 4	C	381	387	parallel
Strand 5	C	406	409	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	390	391	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	218	220	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	170	171	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	324	first strand
Strand 2	D	335	341	anti-parallel
Strand 3	D	348	357	anti-parallel
Strand 4	D	381	387	parallel
Strand 5	D	406	409	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	365	first strand
Strand 2	D	390	391	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F0P