Analysis of interatomic Contacts of Structural Units in PDB entry:
4F12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F12 entry

There is 1 chain in PDB entry 4F12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 49ASP 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4F12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 91Right-handed alpha
Helix 2
2
A
109 124Right-handed alpha
Helix 3
3
A
135 145Right-handed alpha
Helix 4
4
A
146 150Right-handed 310
Helix 5
5
A
160 165Right-handed 310
Helix 6
6
A
178 180Right-handed 310
Helix 7
7
A
181 193Right-handed alpha
Helix 8
8
A
205 219Right-handed alpha
Helix 9
9
A
236 246Right-handed alpha
Helix 10
10
A
256 270Right-handed alpha
Helix 11
11
A
303 312Right-handed alpha
Helix 12
12
A
334 347Right-handed alpha
Helix 13
13
A
354 379Right-handed alpha
Helix 14
14
A
384 388Right-handed 310
Helix 15
15
A
392 405Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4F12. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 105first strand
Strand 2
A
55 62parallel
Strand 3
A
127 132parallel
Strand 4
A
152 155parallel
Strand 5
A
172 174parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 232first strand
Strand 2
A
197 203parallel
Strand 3
A
250 254parallel
Strand 4
A
278 282parallel
Strand 5
A
315 319parallel
Strand 6
A
425 432anti-parallel
Strand 7
A
435 443anti-parallel
Strand 8
A
448 451anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
413 418anti-parallel
Strand 3
A
421 422anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il