Analysis of interatomic Contacts of Structural Units in PDB entry:
4F15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F15 entry

There are 12 chains in PDB entry 4F15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 43	PHE 393
B	VAL 2	CYS 220
C	ILE 1	ASN 213
D	LYS 43	GLU 427
E	VAL 2	CYS 220
F	ILE 1	ASN 213
G	LYS 43	GLN 392
H	VAL 2	CYS 220
I	ILE 1	ASN 213
J	LYS 43	THR 437
K	VAL 2	CYS 220
L	ILE 1	ASN 213

There are 33 helices in PDB entry 4F15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	56	63	Right-handed alpha
Helix 2	2	A	97	105	Right-handed alpha
Helix 3	3	A	118	123	Right-handed alpha
Helix 4	4	A	184	192	Right-handed alpha
Helix 5	5	A	384	389	Right-handed 310
Helix 6	6	B	163	168	Right-handed 310
Helix 7	7	B	209	212	Right-handed 310
Helix 8	8	D	56	63	Right-handed alpha
Helix 9	9	D	97	105	Right-handed alpha
Helix 10	10	D	118	123	Right-handed alpha
Helix 11	11	D	184	190	Right-handed alpha
Helix 12	12	D	384	388	Right-handed alpha
Helix 13	13	D	416	426	Right-handed alpha
Helix 14	14	E	86	90	Right-handed 310
Helix 15	15	E	163	167	Right-handed 310
Helix 16	16	F	82	87	Right-handed 310
Helix 17	17	G	56	61	Right-handed alpha
Helix 18	18	G	83	87	Right-handed 310
Helix 19	19	G	97	105	Right-handed alpha
Helix 20	20	G	184	193	Right-handed alpha
Helix 21	21	H	86	90	Right-handed 310
Helix 22	22	H	195	197	Right-handed 310
Helix 23	23	J	56	63	Right-handed alpha
Helix 24	24	J	97	105	Right-handed alpha
Helix 25	25	J	184	193	Right-handed alpha
Helix 26	26	J	381	387	Right-handed alpha
Helix 27	27	J	419	424	Right-handed alpha
Helix 28	28	J	425	430	Right-handed 310
Helix 29	29	J	431	437	Right-handed alpha
Helix 30	30	K	86	90	Right-handed 310
Helix 31	31	K	166	168	Right-handed 310
Helix 32	32	K	195	197	Right-handed 310
Helix 33	33	K	209	212	Right-handed 310

There are 53 sheets in PDB entry 4F15. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	115	first strand
Strand 2	A	253	257	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	248	251	anti-parallel
Strand 5	A	148	150	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	115	first strand
Strand 2	A	253	257	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	226	234	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	142	143	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	239	244	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	115	119	parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	50	anti-parallel
Strand 6	B	57	58	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	68	71	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	144	153	anti-parallel
Strand 3	B	188	192	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	144	153	anti-parallel
Strand 3	B	184	186	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	203	207	anti-parallel
Strand 3	B	214	218	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	65	70	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	56	57	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	136	139	anti-parallel
Strand 3	C	177	180	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	152	first strand
Strand 2	C	196	200	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	226	234	parallel
Strand 3	D	172	181	anti-parallel
Strand 4	D	253	257	anti-parallel
Strand 5	D	111	115	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	226	234	parallel
Strand 3	D	172	181	anti-parallel
Strand 4	D	248	251	anti-parallel
Strand 5	D	148	150	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	142	143	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	240	244	anti-parallel
Strand 3	D	199	200	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	116	119	parallel
Strand 3	E	91	97	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	48	50	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	E	21	22	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	E	68	71	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	143	153	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	170	177	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	161	first strand
Strand 2	E	203	207	anti-parallel
Strand 3	E	214	218	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	65	70	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	56	57	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	121	first strand
Strand 2	F	134	139	anti-parallel
Strand 3	F	177	182	anti-parallel
Strand 4	F	166	167	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	152	first strand
Strand 2	F	196	200	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	96	first strand
Strand 2	G	226	234	parallel
Strand 3	G	173	181	anti-parallel
Strand 4	G	248	251	anti-parallel
Strand 5	G	148	150	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	115	first strand
Strand 2	G	253	258	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	166	first strand
Strand 2	G	239	240	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	209	210	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	17	22	anti-parallel
Strand 3	H	78	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	116	119	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	32	38	anti-parallel
Strand 5	H	46	50	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	170	177	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	203	208	anti-parallel
Strand 3	H	212	218	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	73	78	anti-parallel
Strand 3	I	65	70	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	52	first strand
Strand 2	I	56	57	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	121	first strand
Strand 2	I	133	139	anti-parallel
Strand 3	I	177	183	anti-parallel
Strand 4	I	166	167	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	152	first strand
Strand 2	I	196	200	anti-parallel
Strand 3	I	207	208	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	52	first strand
Strand 2	J	80	81	parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	111	115	first strand
Strand 2	J	253	257	anti-parallel
Strand 3	J	172	180	anti-parallel
Strand 4	J	248	251	anti-parallel
Strand 5	J	148	150	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	111	115	first strand
Strand 2	J	253	257	anti-parallel
Strand 3	J	172	180	anti-parallel
Strand 4	J	227	234	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	161	162	first strand
Strand 2	J	243	244	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	165	166	first strand
Strand 2	J	239	240	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	200	first strand
Strand 2	J	209	210	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	16	23	anti-parallel
Strand 3	K	77	83	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 6 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	11	first strand
Strand 2	K	115	119	parallel
Strand 3	K	91	97	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	46	50	anti-parallel
Strand 6	K	57	59	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	132	first strand
Strand 2	K	147	153	anti-parallel
Strand 3	K	184	193	anti-parallel
Strand 4	K	143	145	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	132	first strand
Strand 2	K	147	153	anti-parallel
Strand 3	K	184	193	anti-parallel
Strand 4	K	170	177	anti-parallel

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There are 3 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	159	162	first strand
Strand 2	K	203	208	anti-parallel
Strand 3	K	213	218	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	73	78	anti-parallel
Strand 4	L	67	69	anti-parallel

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There are 2 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	51	52	first strand
Strand 2	L	56	57	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	121	first strand
Strand 2	L	134	139	anti-parallel
Strand 3	L	177	182	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	152	first strand
Strand 2	L	196	200	anti-parallel
Strand 3	L	206	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F15

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F15