Analysis of interatomic Contacts of Structural Units in PDB entry:
4F1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F1E entry

There are 18 chains in PDB entry 4F1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 42LYS 106
B
 ALA 43GLU 107
C
 LYS 42GLU 107
D
 ALA 43GLU 107
E
 LYS 42LYS 106
F
 LYS 42LYS 106
G
 LYS 42GLU 107
H
 ALA 43THR 108
I
 LYS 42LYS 106
J
 ASN 41LYS 106
K
 LYS 42GLU 107
L
 ALA 43LYS 106
M
 LYS 42LYS 106
N
 LYS 42LYS 106
O
 ASN 46GLU 107
P
 MET 44LYS 106
Q
 MET 44GLU 107
R
 MET 44GLU 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4F1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 66Right-handed 310
Helix 2
2
A
85 95Right-handed alpha
Helix 3
3
B
63 65Right-handed 310
Helix 4
4
B
85 95Right-handed alpha
Helix 5
5
C
63 66Right-handed 310
Helix 6
6
C
85 95Right-handed alpha
Helix 7
7
D
63 65Right-handed 310
Helix 8
8
D
85 95Right-handed alpha
Helix 9
9
E
63 66Right-handed 310
Helix 10
10
E
85 95Right-handed alpha
Helix 11
11
F
62 66Right-handed alpha
Helix 12
12
F
85 95Right-handed alpha
Helix 13
13
G
63 66Right-handed 310
Helix 14
14
G
85 95Right-handed alpha
Helix 15
15
H
63 66Right-handed 310
Helix 16
16
H
85 95Right-handed alpha
Helix 17
17
I
63 66Right-handed 310
Helix 18
18
I
85 95Right-handed alpha
Helix 19
19
J
63 66Right-handed 310
Helix 20
20
J
85 95Right-handed alpha
Helix 21
21
K
63 66Right-handed 310
Helix 22
22
K
85 95Right-handed alpha
Helix 23
23
L
63 66Right-handed 310
Helix 24
24
L
85 95Right-handed alpha
Helix 25
25
M
63 66Right-handed 310
Helix 26
26
M
85 95Right-handed alpha
Helix 27
27
N
63 66Right-handed 310
Helix 28
28
N
85 95Right-handed alpha
Helix 29
29
O
63 66Right-handed 310
Helix 30
30
O
85 95Right-handed alpha
Helix 31
31
P
63 65Right-handed 310
Helix 32
32
P
85 95Right-handed alpha
Helix 33
33
Q
63 66Right-handed 310
Helix 34
34
Q
85 92Right-handed alpha
Helix 35
35
R
63 66Right-handed 310
Helix 36
36
R
85 95Right-handed alpha
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There are 18 sheets in PDB entry 4F1E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
B
98 104parallel
Strand 3
B
68 71anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
98 104anti-parallel
Strand 3
B
56 61parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
D
98 104parallel
Strand 3
D
68 71anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 71first strand
Strand 2
C
98 104anti-parallel
Strand 3
D
56 61parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 61first strand
Strand 2
F
101 104parallel
Strand 3
F
68 71anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
68 71first strand
Strand 2
E
98 104anti-parallel
Strand 3
F
56 61parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
56 61first strand
Strand 2
H
98 104parallel
Strand 3
H
68 71anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
68 71first strand
Strand 2
G
98 104anti-parallel
Strand 3
H
56 61parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
56 61first strand
Strand 2
J
98 104parallel
Strand 3
J
68 71anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
68 71first strand
Strand 2
I
98 104anti-parallel
Strand 3
J
56 61parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
56 61first strand
Strand 2
L
98 104parallel
Strand 3
L
68 71anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
68 71first strand
Strand 2
K
98 104anti-parallel
Strand 3
L
56 61parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
56 61first strand
Strand 2
N
98 104parallel
Strand 3
N
68 71anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
68 71first strand
Strand 2
M
98 104anti-parallel
Strand 3
N
56 61parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
56 61first strand
Strand 2
P
98 104parallel
Strand 3
P
68 71anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
68 71first strand
Strand 2
O
98 104anti-parallel
Strand 3
P
56 61parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
56 61first strand
Strand 2
R
98 104parallel
Strand 3
R
68 71anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
68 71first strand
Strand 2
Q
98 104anti-parallel
Strand 3
R
56 61parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il