Analysis of interatomic Contacts of Structural Units in PDB entry:
4F33

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F33 entry

There are 4 chains in PDB entry 4F33 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	GLY 212
B	VAL 2	LYS 220
C	ASP 2	GLY 212
D	VAL 2	PHE 29

There are 42 helices in PDB entry 4F33. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	79	83	Right-handed 310
Helix 2	2	A	121	127	Right-handed alpha
Helix 3	3	A	183	187	Right-handed alpha
Helix 4	4	B	28	32	Right-handed 310
Helix 5	5	B	62	65	Right-handed 310
Helix 6	6	B	74	76	Right-handed 310
Helix 7	7	B	87	91	Right-handed 310
Helix 8	8	B	133	135	Right-handed 310
Helix 9	9	B	162	164	Right-handed 310
Helix 10	10	B	193	195	Right-handed 310
Helix 11	11	B	207	209	Right-handed 310
Helix 12	12	C	79	83	Right-handed 310
Helix 13	13	C	121	127	Right-handed alpha
Helix 14	14	C	183	188	Right-handed alpha
Helix 15	15	D	28	32	Right-handed 310
Helix 16	16	D	62	65	Right-handed 310
Helix 17	17	D	74	76	Right-handed 310
Helix 18	18	D	87	91	Right-handed 310
Helix 19	19	D	133	135	Right-handed 310
Helix 20	20	D	162	164	Right-handed 310
Helix 21	21	D	193	195	Right-handed 310
Helix 22	22	D	207	209	Right-handed 310
Helix 23	23	E	79	83	Right-handed 310
Helix 24	24	E	121	127	Right-handed alpha
Helix 25	25	E	183	187	Right-handed alpha
Helix 26	26	F	28	32	Right-handed 310
Helix 27	27	F	62	65	Right-handed 310
Helix 28	28	F	87	91	Right-handed 310
Helix 29	29	F	133	135	Right-handed 310
Helix 30	30	F	162	164	Right-handed 310
Helix 31	31	F	193	195	Right-handed 310
Helix 32	32	F	207	209	Right-handed 310
Helix 33	33	G	79	83	Right-handed 310
Helix 34	34	G	121	127	Right-handed alpha
Helix 35	35	G	183	188	Right-handed alpha
Helix 36	36	H	28	32	Right-handed 310
Helix 37	37	H	62	65	Right-handed 310
Helix 38	38	H	87	91	Right-handed 310
Helix 39	39	H	133	135	Right-handed 310
Helix 40	40	H	162	164	Right-handed 310
Helix 41	41	H	193	195	Right-handed 310
Helix 42	42	H	207	209	Right-handed 310

There are 42 sheets in PDB entry 4F33. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	102	106	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	34	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	102	106	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	173	182	anti-parallel
Strand 4	A	159	163	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	191	197	anti-parallel
Strand 4	A	205	210	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	40	anti-parallel
Strand 5	B	44	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	108	109	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	182	191	anti-parallel
Strand 4	B	169	171	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	182	191	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	211	216	anti-parallel
Strand 4	H	211	216	anti-parallel
Strand 5	H	201	206	anti-parallel
Strand 6	H	157	160	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	34	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	145	150	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	205	210	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	40	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	108	109	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	182	191	anti-parallel
Strand 4	D	169	171	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	141	151	anti-parallel
Strand 3	D	182	191	anti-parallel
Strand 4	D	175	176	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	211	216	anti-parallel
Strand 4	F	211	216	anti-parallel
Strand 5	F	201	206	anti-parallel
Strand 6	F	157	160	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	173	182	anti-parallel
Strand 4	E	159	163	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	145	150	anti-parallel
Strand 3	E	191	197	anti-parallel
Strand 4	E	205	210	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	40	anti-parallel
Strand 5	F	44	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	106	109	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	130	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	182	191	anti-parallel
Strand 4	F	169	171	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	182	191	anti-parallel
Strand 4	F	175	176	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	20	26	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	102	106	parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	102	106	parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	118	first strand
Strand 2	G	129	139	anti-parallel
Strand 3	G	173	182	anti-parallel
Strand 4	G	159	163	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	154	first strand
Strand 2	G	145	150	anti-parallel
Strand 3	G	191	197	anti-parallel
Strand 4	G	205	210	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	108	109	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	138	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F33

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F33