Analysis of interatomic Contacts of Structural Units in PDB entry:
4F38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F38 entry

There are 2 chains in PDB entry 4F38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 190
B
 THR 7ASP 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4F38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 27Right-handed alpha
Helix 2
2
A
63 67Right-handed 310
Helix 3
3
A
69 74Right-handed 310
Helix 4
4
A
88 94Right-handed alpha
Helix 5
5
A
98 107Right-handed alpha
Helix 6
6
A
118 122Right-handed 310
Helix 7
7
A
124 134Right-handed alpha
Helix 8
8
A
140 151Right-handed alpha
Helix 9
9
A
166 179Right-handed alpha
Helix 10
10
B
10 15Right-handed alpha
Helix 11
11
B
34 41Right-handed alpha
Helix 12
12
B
45 57Right-handed alpha
Helix 13
13
B
93 99Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4F38. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
4 11parallel
Strand 4
A
79 85parallel
Strand 5
A
112 117parallel
Strand 6
A
155 158parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
70 78anti-parallel
Strand 3
B
109 118anti-parallel
Strand 4
B
152 156anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
70 78anti-parallel
Strand 3
B
109 118anti-parallel
Strand 4
B
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
190 199parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
123 134anti-parallel
Strand 5
B
137 149anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il