Analysis of interatomic Contacts of Structural Units in PDB entry:
4F3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F3E entry

There are 2 chains in PDB entry 4F3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 496
B
 GLU 5LEU 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 4F3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 34Right-handed alpha
Helix 2
2
A
35 38Right-handed 310
Helix 3
3
A
45 65Right-handed alpha
Helix 4
4
A
69 80Right-handed alpha
Helix 5
5
A
83 95Right-handed alpha
Helix 6
6
A
122 125Right-handed 310
Helix 7
7
A
149 164Right-handed alpha
Helix 8
8
A
194 203Right-handed alpha
Helix 9
9
A
213 217Right-handed 310
Helix 10
10
A
221 226Right-handed alpha
Helix 11
11
A
227 229Right-handed 310
Helix 12
12
A
236 242Right-handed alpha
Helix 13
13
A
298 303Right-handed 310
Helix 14
14
A
307 311Right-handed 310
Helix 15
15
A
315 331Right-handed alpha
Helix 16
16
A
367 401Right-handed alpha
Helix 17
17
A
411 423Right-handed alpha
Helix 18
18
A
424 442Right-handed alpha
Helix 19
19
A
448 473Right-handed alpha
Helix 20
20
A
475 477Right-handed 310
Helix 21
21
A
478 494Right-handed alpha
Helix 22
22
B
27 34Right-handed alpha
Helix 23
23
B
35 38Right-handed 310
Helix 24
24
B
45 65Right-handed alpha
Helix 25
25
B
69 80Right-handed alpha
Helix 26
26
B
83 95Right-handed alpha
Helix 27
27
B
122 125Right-handed 310
Helix 28
28
B
149 164Right-handed alpha
Helix 29
29
B
194 203Right-handed alpha
Helix 30
30
B
213 217Right-handed 310
Helix 31
31
B
221 226Right-handed alpha
Helix 32
32
B
227 229Right-handed 310
Helix 33
33
B
236 242Right-handed alpha
Helix 34
34
B
298 303Right-handed 310
Helix 35
35
B
307 311Right-handed 310
Helix 36
36
B
315 331Right-handed alpha
Helix 37
37
B
367 401Right-handed alpha
Helix 38
38
B
411 423Right-handed alpha
Helix 39
39
B
424 442Right-handed alpha
Helix 40
40
B
448 473Right-handed alpha
Helix 41
41
B
475 477Right-handed 310
Helix 42
42
B
478 494Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 4F3E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
257 264anti-parallel
Strand 3
A
246 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 177anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
337 347anti-parallel
Strand 3
A
350 361anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
267 269parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
15 19anti-parallel
Strand 3
B
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
257 264anti-parallel
Strand 3
B
246 252anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 171first strand
Strand 2
B
174 177anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 191first strand
Strand 2
B
337 347anti-parallel
Strand 3
B
350 361anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 233first strand
Strand 2
B
267 269parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
288 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il