Analysis of interatomic Contacts of Structural Units in PDB entry:
4F3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F3P entry

There are 2 chains in PDB entry 4F3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 26GLN 300
B
 LYS 26GLN 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4F3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 63Right-handed alpha
Helix 2
2
A
72 74Right-handed 310
Helix 3
3
A
75 82Right-handed alpha
Helix 4
4
A
95 100Right-handed alpha
Helix 5
5
A
127 131Right-handed 310
Helix 6
6
A
141 151Right-handed alpha
Helix 7
7
A
161 171Right-handed alpha
Helix 8
8
A
181 190Right-handed alpha
Helix 9
9
A
217 233Right-handed alpha
Helix 10
10
A
233 244Right-handed alpha
Helix 11
11
B
49 63Right-handed alpha
Helix 12
12
B
72 74Right-handed 310
Helix 13
13
B
75 82Right-handed alpha
Helix 14
14
B
95 100Right-handed alpha
Helix 15
15
B
127 131Right-handed 310
Helix 16
16
B
141 151Right-handed alpha
Helix 17
17
B
161 171Right-handed alpha
Helix 18
18
B
181 190Right-handed alpha
Helix 19
19
B
218 233Right-handed alpha
Helix 20
20
B
233 244Right-handed alpha
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There are 6 sheets in PDB entry 4F3P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
28 33parallel
Strand 3
A
87 93parallel
Strand 4
A
196 213anti-parallel
Strand 5
A
102 104anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
28 33parallel
Strand 3
A
87 93parallel
Strand 4
A
196 213anti-parallel
Strand 5
A
109 118anti-parallel
Strand 6
A
176 180anti-parallel
Strand 7
A
134 138parallel
Strand 8
A
155 159parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
46 48anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 71first strand
Strand 2
B
27 33parallel
Strand 3
B
87 93parallel
Strand 4
B
196 213anti-parallel
Strand 5
B
102 104anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 71first strand
Strand 2
B
27 33parallel
Strand 3
B
87 93parallel
Strand 4
B
196 213anti-parallel
Strand 5
B
109 118anti-parallel
Strand 6
B
176 180anti-parallel
Strand 7
B
134 138parallel
Strand 8
B
155 159parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
46 48anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il