Analysis of interatomic Contacts of Structural Units in PDB entry:
4F40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F40 entry

There are 2 chains in PDB entry 4F40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3PHE 284
B
 GLY 3PHE 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4F40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 43Right-handed alpha
Helix 2
2
A
51 55Right-handed 310
Helix 3
3
A
56 68Right-handed alpha
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
86 102Right-handed alpha
Helix 7
7
A
116 124Right-handed alpha
Helix 8
8
A
125 140Right-handed alpha
Helix 9
9
A
152 161Right-handed alpha
Helix 10
10
A
180 190Right-handed alpha
Helix 11
11
A
204 207Right-handed 310
Helix 12
12
A
208 218Right-handed alpha
Helix 13
13
A
221 233Right-handed alpha
Helix 14
14
A
243 252Right-handed alpha
Helix 15
15
A
259 268Right-handed alpha
Helix 16
16
B
30 43Right-handed alpha
Helix 17
17
B
51 55Right-handed 310
Helix 18
18
B
56 68Right-handed alpha
Helix 19
19
B
70 74Right-handed 310
Helix 20
20
B
81 85Right-handed 310
Helix 21
21
B
86 102Right-handed alpha
Helix 22
22
B
116 124Right-handed alpha
Helix 23
23
B
125 140Right-handed alpha
Helix 24
24
B
152 161Right-handed alpha
Helix 25
25
B
180 190Right-handed alpha
Helix 26
26
B
204 207Right-handed 310
Helix 27
27
B
208 218Right-handed alpha
Helix 28
28
B
221 233Right-handed alpha
Helix 29
29
B
243 252Right-handed alpha
Helix 30
30
B
259 268Right-handed alpha
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There are 4 sheets in PDB entry 4F40. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
16 18anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
47 49parallel
Strand 3
A
75 80parallel
Strand 4
A
106 111parallel
Strand 5
A
143 149parallel
Strand 6
A
169 173parallel
Strand 7
A
193 197parallel
Strand 8
A
236 237parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
16 18anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
47 49parallel
Strand 3
B
75 80parallel
Strand 4
B
106 111parallel
Strand 5
B
143 149parallel
Strand 6
B
169 173parallel
Strand 7
B
193 197parallel
Strand 8
B
236 237parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il