Analysis of interatomic Contacts of Structural Units in PDB entry:
4F41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F41 entry

There are 2 chains in PDB entry 4F41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 103LEU 421
C
 C 1 G 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4F41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 118Right-handed alpha
Helix 2
2
A
128 142Right-handed alpha
Helix 3
3
A
146 161Right-handed alpha
Helix 4
4
A
165 184Right-handed alpha
Helix 5
5
A
188 193Right-handed 310
Helix 6
6
A
197 218Right-handed alpha
Helix 7
7
A
224 235Right-handed alpha
Helix 8
8
A
236 238Right-handed 310
Helix 9
9
A
240 253Right-handed alpha
Helix 10
10
A
255 262Right-handed alpha
Helix 11
11
A
306 319Right-handed alpha
Helix 12
12
A
320 327Right-handed alpha
Helix 13
13
A
330 338Right-handed alpha
Helix 14
14
A
338 350Right-handed alpha
Helix 15
15
A
363 377Right-handed alpha
Helix 16
16
A
383 392Right-handed alpha
Helix 17
17
A
400 405Right-handed 310
Helix 18
18
A
410 419Right-handed alpha
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There are 2 sheets in PDB entry 4F41. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
408 409parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 270first strand
Strand 2
A
273 281anti-parallel
Strand 3
A
299 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il