Analysis of interatomic Contacts of Structural Units in PDB entry:
4F48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F48 entry

There are 2 chains in PDB entry 4F48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7MET 247
B
 GLN 8GLY 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4F48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
54 56Right-handed 310
Helix 3
3
A
57 65Right-handed alpha
Helix 4
4
A
66 88Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
105 119Right-handed alpha
Helix 7
7
A
122 124Right-handed 310
Helix 8
8
A
132 138Right-handed alpha
Helix 9
9
A
138 151Right-handed alpha
Helix 10
10
A
166 175Right-handed alpha
Helix 11
11
A
182 187Right-handed alpha
Helix 12
12
A
192 207Right-handed alpha
Helix 13
13
A
220 231Right-handed alpha
Helix 14
14
B
17 24Right-handed alpha
Helix 15
15
B
90 105Right-handed alpha
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There are 2 sheets in PDB entry 4F48. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
47 53parallel
Strand 3
B
61 70anti-parallel
Strand 4
A
50 52anti-parallel
Strand 5
A
38 47anti-parallel
Strand 6
B
82 86first strand
Strand 7
B
33 37anti-parallel
Strand 8
B
25 26anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
47 53parallel
Strand 3
B
61 70anti-parallel
Strand 4
A
93 97first strand
Strand 5
A
126 131parallel
Strand 6
A
155 161parallel
Strand 7
A
178 181parallel
Strand 8
A
212 215parallel
Strand 9
A
234 235parallel
Strand 10
A
21 30anti-parallel
Strand 11
A
38 47anti-parallel
Strand 12
B
82 86first strand
Strand 13
B
33 37anti-parallel
Strand 14
B
25 26anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il