Analysis of interatomic Contacts of Structural Units in PDB entry:
4F4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F4E entry

There are 4 chains in PDB entry 4F4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 247
A
 SER 249LYS 399
B
 MET 1SER 247
B
 SER 249LYS 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4F4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
48 61Right-handed alpha
Helix 3
3
A
73 86Right-handed alpha
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
104 120Right-handed alpha
Helix 6
6
A
133 142Right-handed alpha
Helix 7
7
A
160 169Right-handed alpha
Helix 8
8
A
192 207Right-handed alpha
Helix 9
9
A
224 226Right-handed 310
Helix 10
10
A
227 236Right-handed alpha
Helix 11
11
A
252 255Right-handed 310
Helix 12
12
A
266 283Right-handed alpha
Helix 13
13
A
290 302Right-handed alpha
Helix 14
14
A
302 334Right-handed alpha
Helix 15
15
A
341 346Right-handed alpha
Helix 16
16
A
356 368Right-handed alpha
Helix 17
17
A
380 382Right-handed 310
Helix 18
18
A
386 399Right-handed alpha
Helix 19
19
B
13 25Right-handed alpha
Helix 20
20
B
48 62Right-handed alpha
Helix 21
21
B
73 86Right-handed alpha
Helix 22
22
B
89 94Right-handed alpha
Helix 23
23
B
104 120Right-handed alpha
Helix 24
24
B
133 142Right-handed alpha
Helix 25
25
B
160 170Right-handed alpha
Helix 26
26
B
192 207Right-handed alpha
Helix 27
27
B
222 227Right-handed alpha
Helix 28
28
B
227 236Right-handed alpha
Helix 29
29
B
252 255Right-handed 310
Helix 30
30
B
266 283Right-handed alpha
Helix 31
31
B
290 302Right-handed alpha
Helix 32
32
B
302 334Right-handed alpha
Helix 33
33
B
340 346Right-handed alpha
Helix 34
34
B
356 368Right-handed alpha
Helix 35
35
B
380 382Right-handed 310
Helix 36
36
B
386 398Right-handed alpha
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There are 8 sheets in PDB entry 4F4E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
369 370parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
240 245anti-parallel
Strand 4
A
209 214parallel
Strand 5
A
176 180parallel
Strand 6
A
125 129parallel
Strand 7
A
146 150parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
158 159anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
376 378anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
369 370parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 103first strand
Strand 2
B
257 263anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
209 214parallel
Strand 5
B
176 180parallel
Strand 6
B
125 128parallel
Strand 7
B
146 149parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
158 159anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
376 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il