Analysis of interatomic Contacts of Structural Units in PDB entry:
4F4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F4F entry

There are 2 chains in PDB entry 4F4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ALA 463
B
 SER 0ALA 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 4F4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
39 45Right-handed alpha
Helix 3
3
A
50 60Right-handed alpha
Helix 4
4
A
61 64Right-handed 310
Helix 5
5
A
68 82Right-handed alpha
Helix 6
6
A
111 130Right-handed alpha
Helix 7
7
A
142 153Right-handed alpha
Helix 8
8
A
170 179Right-handed alpha
Helix 9
9
A
193 207Right-handed alpha
Helix 10
10
A
207 215Right-handed alpha
Helix 11
11
A
223 228Right-handed alpha
Helix 12
12
A
230 241Right-handed alpha
Helix 13
13
A
257 270Right-handed alpha
Helix 14
14
A
284 293Right-handed alpha
Helix 15
15
A
305 309Right-handed 310
Helix 16
16
A
315 324Right-handed alpha
Helix 17
17
A
327 342Right-handed alpha
Helix 18
18
A
347 357Right-handed alpha
Helix 19
19
A
364 380Right-handed alpha
Helix 20
20
A
384 398Right-handed alpha
Helix 21
21
A
411 414Right-handed 310
Helix 22
22
A
415 424Right-handed alpha
Helix 23
23
A
430 434Right-handed 310
Helix 24
24
A
435 439Right-handed 310
Helix 25
25
A
449 461Right-handed alpha
Helix 26
26
B
14 22Right-handed alpha
Helix 27
27
B
39 45Right-handed alpha
Helix 28
28
B
50 60Right-handed alpha
Helix 29
29
B
61 64Right-handed 310
Helix 30
30
B
68 82Right-handed alpha
Helix 31
31
B
111 131Right-handed alpha
Helix 32
32
B
142 153Right-handed alpha
Helix 33
33
B
170 179Right-handed alpha
Helix 34
34
B
193 207Right-handed alpha
Helix 35
35
B
207 215Right-handed alpha
Helix 36
36
B
223 228Right-handed alpha
Helix 37
37
B
230 241Right-handed alpha
Helix 38
38
B
257 270Right-handed alpha
Helix 39
39
B
284 293Right-handed alpha
Helix 40
40
B
305 309Right-handed 310
Helix 41
41
B
315 324Right-handed alpha
Helix 42
42
B
327 342Right-handed alpha
Helix 43
43
B
347 357Right-handed alpha
Helix 44
44
B
364 380Right-handed alpha
Helix 45
45
B
384 398Right-handed alpha
Helix 46
46
B
411 414Right-handed 310
Helix 47
47
B
415 424Right-handed alpha
Helix 48
48
B
430 434Right-handed 310
Helix 49
49
B
435 439Right-handed 310
Helix 50
50
B
449 461Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4F4F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
30 32anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
404 408parallel
Strand 4
A
248 253parallel
Strand 5
A
273 280parallel
Strand 6
A
358 362parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
134 139parallel
Strand 3
A
158 165parallel
Strand 4
A
185 191parallel
Strand 5
A
444 447parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
343 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
30 32anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 95first strand
Strand 2
B
98 102anti-parallel
Strand 3
B
404 408parallel
Strand 4
B
248 253parallel
Strand 5
B
273 280parallel
Strand 6
B
358 362parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 218first strand
Strand 2
B
134 139parallel
Strand 3
B
158 165parallel
Strand 4
B
185 191parallel
Strand 5
B
444 447parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
343 345anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il