Analysis of interatomic Contacts of Structural Units in PDB entry:
4F4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F4H entry

There are 2 chains in PDB entry 4F4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASP 561
B
 GLY -1ASP 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4F4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
51 56Right-handed 310
Helix 3
3
A
57 76Right-handed alpha
Helix 4
4
A
139 143Right-handed 310
Helix 5
5
A
164 170Right-handed 310
Helix 6
6
A
171 180Right-handed alpha
Helix 7
7
A
196 213Right-handed alpha
Helix 8
8
A
274 294Right-handed alpha
Helix 9
9
A
306 321Right-handed alpha
Helix 10
10
A
336 351Right-handed alpha
Helix 11
11
A
359 371Right-handed alpha
Helix 12
12
A
380 403Right-handed alpha
Helix 13
13
A
411 418Right-handed alpha
Helix 14
14
A
437 451Right-handed alpha
Helix 15
15
A
461 467Right-handed alpha
Helix 16
16
A
485 497Right-handed alpha
Helix 17
17
A
502 509Right-handed alpha
Helix 18
18
A
512 526Right-handed alpha
Helix 19
19
A
526 531Right-handed alpha
Helix 20
20
B
16 34Right-handed alpha
Helix 21
21
B
51 56Right-handed 310
Helix 22
22
B
57 76Right-handed alpha
Helix 23
23
B
139 144Right-handed alpha
Helix 24
24
B
164 170Right-handed 310
Helix 25
25
B
171 180Right-handed alpha
Helix 26
26
B
196 213Right-handed alpha
Helix 27
27
B
274 295Right-handed alpha
Helix 28
28
B
306 321Right-handed alpha
Helix 29
29
B
336 351Right-handed alpha
Helix 30
30
B
359 370Right-handed alpha
Helix 31
31
B
370 375Right-handed alpha
Helix 32
32
B
380 403Right-handed alpha
Helix 33
33
B
411 418Right-handed alpha
Helix 34
34
B
437 451Right-handed alpha
Helix 35
35
B
452 455Right-handed 310
Helix 36
36
B
461 466Right-handed alpha
Helix 37
37
B
485 497Right-handed alpha
Helix 38
38
B
502 509Right-handed alpha
Helix 39
39
B
512 526Right-handed alpha
Helix 40
40
B
526 531Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4F4H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 128first strand
Strand 2
A
111 119anti-parallel
Strand 3
A
82 90anti-parallel
Strand 4
A
38 40parallel
Strand 5
A
3 9parallel
Strand 6
A
253 260anti-parallel
Strand 7
A
263 264anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
184 189parallel
Strand 4
A
216 220parallel
Strand 5
A
235 237anti-parallel
Strand 6
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
228 231anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
325 329parallel
Strand 3
A
299 302parallel
Strand 4
A
405 408parallel
Strand 5
A
430 431parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 128first strand
Strand 2
B
111 119anti-parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
38 40parallel
Strand 5
B
2 9parallel
Strand 6
B
253 260anti-parallel
Strand 7
B
263 264anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
158 162anti-parallel
Strand 3
B
184 189parallel
Strand 4
B
216 220parallel
Strand 5
B
235 237anti-parallel
Strand 6
B
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
228 231anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 356first strand
Strand 2
B
325 329parallel
Strand 3
B
299 302parallel
Strand 4
B
405 408parallel
Strand 5
B
430 431parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il