Analysis of interatomic Contacts of Structural Units in PDB entry:
4F4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F4R entry

There is 1 chain in PDB entry 4F4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -4TRP 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4F4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 2Right-handed alpha
Helix 2
2
A
39 51Right-handed alpha
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
62 74Right-handed alpha
Helix 5
5
A
79 102Right-handed alpha
Helix 6
6
A
104 110Right-handed alpha
Helix 7
7
A
127 141Right-handed alpha
Helix 8
8
A
183 203Right-handed alpha
Helix 9
9
A
217 229Right-handed alpha
Helix 10
10
A
230 232Right-handed 310
Helix 11
11
A
244 247Right-handed 310
Helix 12
12
A
248 255Right-handed alpha
Helix 13
13
A
267 270Right-handed 310
Helix 14
14
A
271 277Right-handed alpha
Helix 15
15
A
291 305Right-handed alpha
Helix 16
16
A
319 333Right-handed alpha
Helix 17
17
A
345 352Right-handed alpha
Helix 18
18
A
376 381Right-handed alpha
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There are 4 sheets in PDB entry 4F4R. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
29 33anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
282 283parallel
Strand 3
A
259 261parallel
Strand 4
A
235 237parallel
Strand 5
A
207 211parallel
Strand 6
A
145 150parallel
Strand 7
A
117 125parallel
Strand 8
A
339 341parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
282 283parallel
Strand 3
A
259 261parallel
Strand 4
A
235 237parallel
Strand 5
A
207 211parallel
Strand 6
A
145 150parallel
Strand 7
A
117 125parallel
Strand 8
A
362 364anti-parallel
Strand 9
A
357 359anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
392 395parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il