Analysis of interatomic Contacts of Structural Units in PDB entry:
4F4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F4Y entry

There are 6 chains in PDB entry 4F4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 343
B
 MET 1ILE 343
C
 G 1 C 16
D
 T 2 C 19
P
 G 1 C 16
T
 T 2 C 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4F4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
21 24Right-handed 310
Helix 3
3
A
47 53Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
77 94Right-handed alpha
Helix 6
6
A
118 138Right-handed alpha
Helix 7
7
A
148 158Right-handed alpha
Helix 8
8
A
171 178Right-handed alpha
Helix 9
9
A
191 198Right-handed alpha
Helix 10
10
A
202 207Right-handed 310
Helix 11
11
A
210 219Right-handed alpha
Helix 12
12
A
219 231Right-handed alpha
Helix 13
13
A
258 277Right-handed alpha
Helix 14
14
A
307 323Right-handed alpha
Helix 15
15
B
10 20Right-handed alpha
Helix 16
16
B
21 24Right-handed 310
Helix 17
17
B
47 53Right-handed alpha
Helix 18
18
B
60 68Right-handed alpha
Helix 19
19
B
77 95Right-handed alpha
Helix 20
20
B
118 138Right-handed alpha
Helix 21
21
B
148 159Right-handed alpha
Helix 22
22
B
168 170Right-handed 310
Helix 23
23
B
171 179Right-handed alpha
Helix 24
24
B
180 184Right-handed 310
Helix 25
25
B
188 197Right-handed alpha
Helix 26
26
B
203 207Right-handed 310
Helix 27
27
B
210 219Right-handed alpha
Helix 28
28
B
219 231Right-handed alpha
Helix 29
29
B
258 277Right-handed alpha
Helix 30
30
B
307 326Right-handed alpha
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There are 6 sheets in PDB entry 4F4Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 7anti-parallel
Strand 4
A
142 146anti-parallel
Strand 5
A
164 166parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 256first strand
Strand 2
A
331 342anti-parallel
Strand 3
A
280 290anti-parallel
Strand 4
A
295 301anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
142 146anti-parallel
Strand 5
B
164 166parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
72 75parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 256first strand
Strand 2
B
331 342anti-parallel
Strand 3
B
280 290anti-parallel
Strand 4
B
295 301anti-parallel
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