Analysis of interatomic Contacts of Structural Units in PDB entry:
4F52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F52 entry

There are 6 chains in PDB entry 4F52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 420LYS 689
B
 LYS 20GLN 104
C
 PRO 419MET 688
D
 LYS 20GLN 104
E
 MET 1THR 583
F
 MET 1PHE 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 84 helices in PDB entry 4F52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
420 431Right-handed alpha
Helix 2
2
A
443 455Right-handed alpha
Helix 3
3
A
459 476Right-handed alpha
Helix 4
4
A
481 497Right-handed alpha
Helix 5
5
A
497 526Right-handed alpha
Helix 6
6
A
556 574Right-handed alpha
Helix 7
7
A
605 612Right-handed alpha
Helix 8
8
A
613 616Right-handed 310
Helix 9
9
A
622 630Right-handed alpha
Helix 10
10
A
632 646Right-handed alpha
Helix 11
11
B
53 58Right-handed alpha
Helix 12
12
B
81 88Right-handed alpha
Helix 13
13
C
420 429Right-handed alpha
Helix 14
14
C
445 455Right-handed alpha
Helix 15
15
C
462 476Right-handed alpha
Helix 16
16
C
482 493Right-handed alpha
Helix 17
17
C
498 527Right-handed alpha
Helix 18
18
C
556 574Right-handed alpha
Helix 19
19
C
583 585Right-handed 310
Helix 20
20
C
605 613Right-handed alpha
Helix 21
21
C
614 616Right-handed 310
Helix 22
22
C
622 630Right-handed alpha
Helix 23
23
C
632 646Right-handed alpha
Helix 24
24
D
53 59Right-handed alpha
Helix 25
25
D
81 91Right-handed alpha
Helix 26
26
E
2 14Right-handed alpha
Helix 27
27
E
28 38Right-handed alpha
Helix 28
28
E
42 50Right-handed alpha
Helix 29
29
E
54 61Right-handed alpha
Helix 30
30
E
62 64Right-handed 310
Helix 31
31
E
65 75Right-handed alpha
Helix 32
32
E
83 97Right-handed alpha
Helix 33
33
E
98 100Right-handed 310
Helix 34
34
E
101 107Right-handed alpha
Helix 35
35
E
108 111Right-handed 310
Helix 36
36
E
114 116Right-handed 310
Helix 37
37
E
117 136Right-handed alpha
Helix 38
38
E
139 157Right-handed alpha
Helix 39
39
E
172 193Right-handed alpha
Helix 40
40
E
198 223Right-handed alpha
Helix 41
41
E
236 251Right-handed alpha
Helix 42
42
E
254 258Right-handed 310
Helix 43
43
E
282 295Right-handed alpha
Helix 44
44
E
308 325Right-handed alpha
Helix 45
45
E
328 345Right-handed alpha
Helix 46
46
E
352 357Right-handed 310
Helix 47
47
E
358 375Right-handed alpha
Helix 48
48
E
377 395Right-handed alpha
Helix 49
49
E
396 412Right-handed alpha
Helix 50
50
E
413 431Right-handed alpha
Helix 51
51
E
443 454Right-handed alpha
Helix 52
52
E
467 485Right-handed alpha
Helix 53
53
E
493 496Right-handed 310
Helix 54
54
E
497 505Right-handed alpha
Helix 55
55
E
505 534Right-handed alpha
Helix 56
56
E
552 554Right-handed 310
Helix 57
57
E
555 582Right-handed alpha
Helix 58
58
F
2 15Right-handed alpha
Helix 59
59
F
23 38Right-handed alpha
Helix 60
60
F
54 61Right-handed alpha
Helix 61
61
F
62 64Right-handed 310
Helix 62
62
F
65 74Right-handed alpha
Helix 63
63
F
83 96Right-handed alpha
Helix 64
64
F
98 108Right-handed alpha
Helix 65
65
F
109 111Right-handed 310
Helix 66
66
F
116 136Right-handed alpha
Helix 67
67
F
140 155Right-handed alpha
Helix 68
68
F
172 193Right-handed alpha
Helix 69
69
F
202 223Right-handed alpha
Helix 70
70
F
235 251Right-handed alpha
Helix 71
71
F
282 295Right-handed alpha
Helix 72
72
F
299 303Right-handed 310
Helix 73
73
F
308 325Right-handed alpha
Helix 74
74
F
328 344Right-handed alpha
Helix 75
75
F
352 357Right-handed 310
Helix 76
76
F
358 375Right-handed alpha
Helix 77
77
F
377 395Right-handed alpha
Helix 78
78
F
396 411Right-handed alpha
Helix 79
79
F
413 430Right-handed alpha
Helix 80
80
F
443 454Right-handed alpha
Helix 81
81
F
467 485Right-handed alpha
Helix 82
82
F
497 505Right-handed alpha
Helix 83
83
F
505 530Right-handed alpha
Helix 84
84
F
551 583Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 4F52. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 541first strand
Strand 2
B
22 35parallel
Strand 3
A
577 592anti-parallel
Strand 4
A
600 604anti-parallel
Strand 5
A
681 683parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 621first strand
Strand 2
A
668 671anti-parallel
Strand 3
A
649 650anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
78 80anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
534 541first strand
Strand 2
D
22 34parallel
Strand 3
C
578 581anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
534 541first strand
Strand 2
D
22 34parallel
Strand 3
C
587 592anti-parallel
Strand 4
C
600 604anti-parallel
Strand 5
C
681 683parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
619 621first strand
Strand 2
C
668 671anti-parallel
Strand 3
C
649 651anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 72first strand
Strand 2
D
78 80anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il