Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F5C entry

There are 2 chains in PDB entry 4F5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 61VAL 965
B
THR 60ALA 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 4F5C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
300 306Right-handed alpha
Helix 2
2
A
307 309Right-handed 310
Helix 3
3
A
310 315Right-handed alpha
Helix 4
4
A
315 327Right-handed alpha
Helix 5
5
A
359 363Right-handed alpha
Helix 6
6
A
370 387Right-handed alpha
Helix 7
7
A
398 400Right-handed 310
Helix 8
8
A
401 421Right-handed alpha
Helix 9
9
A
425 428Right-handed 310
Helix 10
10
A
429 434Right-handed alpha
Helix 11
11
A
434 440Right-handed alpha
Helix 12
12
A
453 457Right-handed 310
Helix 13
13
A
459 465Right-handed alpha
Helix 14
14
A
469 486Right-handed alpha
Helix 15
15
A
487 503Right-handed alpha
Helix 16
16
A
509 521Right-handed alpha
Helix 17
17
A
531 541Right-handed alpha
Helix 18
18
A
607 610Right-handed 310
Helix 19
19
A
621 624Right-handed 310
Helix 20
20
A
634 645Right-handed alpha
Helix 21
21
A
646 650Right-handed 310
Helix 22
22
A
651 668Right-handed alpha
Helix 23
23
A
672 679Right-handed alpha
Helix 24
24
A
680 686Right-handed 310
Helix 25
25
A
688 700Right-handed alpha
Helix 26
26
A
701 706Right-handed alpha
Helix 27
27
A
711 734Right-handed alpha
Helix 28
28
A
743 760Right-handed alpha
Helix 29
29
A
762 778Right-handed alpha
Helix 30
30
A
786 798Right-handed alpha
Helix 31
31
A
802 816Right-handed alpha
Helix 32
32
A
818 829Right-handed alpha
Helix 33
33
A
830 832Right-handed 310
Helix 34
34
A
834 845Right-handed alpha
Helix 35
35
A
852 865Right-handed alpha
Helix 36
36
A
868 880Right-handed alpha
Helix 37
37
A
880 887Right-handed alpha
Helix 38
38
A
894 903Right-handed alpha
Helix 39
39
A
904 906Right-handed 310
Helix 40
40
A
908 922Right-handed alpha
Helix 41
41
A
931 962Right-handed alpha
Helix 42
42
B
300 306Right-handed alpha
Helix 43
43
B
307 309Right-handed 310
Helix 44
44
B
310 315Right-handed alpha
Helix 45
45
B
315 327Right-handed alpha
Helix 46
46
B
359 363Right-handed alpha
Helix 47
47
B
370 387Right-handed alpha
Helix 48
48
B
398 400Right-handed 310
Helix 49
49
B
401 421Right-handed alpha
Helix 50
50
B
425 428Right-handed 310
Helix 51
51
B
429 434Right-handed alpha
Helix 52
52
B
434 440Right-handed alpha
Helix 53
53
B
453 457Right-handed 310
Helix 54
54
B
459 465Right-handed alpha
Helix 55
55
B
469 486Right-handed alpha
Helix 56
56
B
487 503Right-handed alpha
Helix 57
57
B
509 521Right-handed alpha
Helix 58
58
B
531 541Right-handed alpha
Helix 59
59
B
607 610Right-handed 310
Helix 60
60
B
621 624Right-handed 310
Helix 61
61
B
634 645Right-handed alpha
Helix 62
62
B
646 650Right-handed 310
Helix 63
63
B
651 668Right-handed alpha
Helix 64
64
B
672 679Right-handed alpha
Helix 65
65
B
680 686Right-handed 310
Helix 66
66
B
688 700Right-handed alpha
Helix 67
67
B
701 706Right-handed alpha
Helix 68
68
B
711 734Right-handed alpha
Helix 69
69
B
743 760Right-handed alpha
Helix 70
70
B
762 778Right-handed alpha
Helix 71
71
B
786 798Right-handed alpha
Helix 72
72
B
802 816Right-handed alpha
Helix 73
73
B
818 829Right-handed alpha
Helix 74
74
B
830 832Right-handed 310
Helix 75
75
B
834 845Right-handed alpha
Helix 76
76
B
852 865Right-handed alpha
Helix 77
77
B
868 880Right-handed alpha
Helix 78
78
B
880 887Right-handed alpha
Helix 79
79
B
894 903Right-handed alpha
Helix 80
80
B
904 906Right-handed 310
Helix 81
81
B
908 922Right-handed alpha
Helix 82
82
B
931 962Right-handed alpha
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There are 28 sheets in PDB entry 4F5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 125first strand
Strand 2
A
170 180anti-parallel
Strand 3
A
133 136anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 125first strand
Strand 2
A
170 180anti-parallel
Strand 3
A
98 109anti-parallel
Strand 4
A
76 88anti-parallel
Strand 5
A
227 235parallel
Strand 6
A
259 263anti-parallel
Strand 7
A
251 252anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 119first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
144 145anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 119first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
150 151anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
187 195first strand
Strand 2
A
198 206anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
239 242first strand
Strand 2
A
277 280anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
283 288first strand
Strand 2
A
294 299anti-parallel
Strand 3
A
335 341parallel
Strand 4
A
354 358parallel
Strand 5
A
348 349anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
394 396first strand
Strand 2
A
505 507parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
603 605first strand
Strand 2
A
556 561anti-parallel
Strand 3
A
546 550anti-parallel
Strand 4
A
628 631parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
582 584first strand
Strand 2
A
596 598anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
591 592first strand
Strand 2
A
586 588anti-parallel
Strand 3
A
617 619anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
124 125first strand
Strand 2
B
170 180anti-parallel
Strand 3
B
133 136anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
124 125first strand
Strand 2
B
170 180anti-parallel
Strand 3
B
96 109anti-parallel
Strand 4
B
76 92anti-parallel
Strand 5
B
227 235parallel
Strand 6
B
259 263anti-parallel
Strand 7
B
251 252anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
113 119first strand
Strand 2
B
156 165anti-parallel
Strand 3
B
144 145anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
113 119first strand
Strand 2
B
156 165anti-parallel
Strand 3
B
150 151anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 195first strand
Strand 2
B
198 206anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 242first strand
Strand 2
B
277 280anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
283 288first strand
Strand 2
B
294 299anti-parallel
Strand 3
B
335 341parallel
Strand 4
B
354 358parallel
Strand 5
B
348 349anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
394 396first strand
Strand 2
B
505 507parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
603 605first strand
Strand 2
B
556 561anti-parallel
Strand 3
B
546 550anti-parallel
Strand 4
B
628 631parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
582 584first strand
Strand 2
B
596 598anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
591 592first strand
Strand 2
B
586 588anti-parallel
Strand 3
B
617 619anti-parallel
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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
314 316first strand
Strand 2
E
288 296anti-parallel
Strand 3
E
333 340parallel
Strand 4
E
408 427parallel
Strand 5
E
382 389anti-parallel
Strand 6
E
326 328anti-parallel
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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
314 316first strand
Strand 2
E
288 296anti-parallel
Strand 3
E
333 340parallel
Strand 4
E
408 427parallel
Strand 5
E
397 405anti-parallel
Strand 6
E
362 366anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
307 309first strand
Strand 2
E
298 301anti-parallel
Strand 3
E
343 344parallel
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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
314 316first strand
Strand 2
F
288 296anti-parallel
Strand 3
F
333 340parallel
Strand 4
F
409 427parallel
Strand 5
F
381 389anti-parallel
Strand 6
F
326 328anti-parallel
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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
314 316first strand
Strand 2
F
288 296anti-parallel
Strand 3
F
333 340parallel
Strand 4
F
409 427parallel
Strand 5
F
397 404anti-parallel
Strand 6
F
362 366anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
307 309first strand
Strand 2
F
298 301anti-parallel
Strand 3
F
343 344parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il