Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F5C entry

There are 2 chains in PDB entry 4F5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 61	VAL 965
B	THR 60	ALA 409

There are 82 helices in PDB entry 4F5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	300	306	Right-handed alpha
Helix 2	2	A	307	309	Right-handed 310
Helix 3	3	A	310	315	Right-handed alpha
Helix 4	4	A	315	327	Right-handed alpha
Helix 5	5	A	359	363	Right-handed alpha
Helix 6	6	A	370	387	Right-handed alpha
Helix 7	7	A	398	400	Right-handed 310
Helix 8	8	A	401	421	Right-handed alpha
Helix 9	9	A	425	428	Right-handed 310
Helix 10	10	A	429	434	Right-handed alpha
Helix 11	11	A	434	440	Right-handed alpha
Helix 12	12	A	453	457	Right-handed 310
Helix 13	13	A	459	465	Right-handed alpha
Helix 14	14	A	469	486	Right-handed alpha
Helix 15	15	A	487	503	Right-handed alpha
Helix 16	16	A	509	521	Right-handed alpha
Helix 17	17	A	531	541	Right-handed alpha
Helix 18	18	A	607	610	Right-handed 310
Helix 19	19	A	621	624	Right-handed 310
Helix 20	20	A	634	645	Right-handed alpha
Helix 21	21	A	646	650	Right-handed 310
Helix 22	22	A	651	668	Right-handed alpha
Helix 23	23	A	672	679	Right-handed alpha
Helix 24	24	A	680	686	Right-handed 310
Helix 25	25	A	688	700	Right-handed alpha
Helix 26	26	A	701	706	Right-handed alpha
Helix 27	27	A	711	734	Right-handed alpha
Helix 28	28	A	743	760	Right-handed alpha
Helix 29	29	A	762	778	Right-handed alpha
Helix 30	30	A	786	798	Right-handed alpha
Helix 31	31	A	802	816	Right-handed alpha
Helix 32	32	A	818	829	Right-handed alpha
Helix 33	33	A	830	832	Right-handed 310
Helix 34	34	A	834	845	Right-handed alpha
Helix 35	35	A	852	865	Right-handed alpha
Helix 36	36	A	868	880	Right-handed alpha
Helix 37	37	A	880	887	Right-handed alpha
Helix 38	38	A	894	903	Right-handed alpha
Helix 39	39	A	904	906	Right-handed 310
Helix 40	40	A	908	922	Right-handed alpha
Helix 41	41	A	931	962	Right-handed alpha
Helix 42	42	B	300	306	Right-handed alpha
Helix 43	43	B	307	309	Right-handed 310
Helix 44	44	B	310	315	Right-handed alpha
Helix 45	45	B	315	327	Right-handed alpha
Helix 46	46	B	359	363	Right-handed alpha
Helix 47	47	B	370	387	Right-handed alpha
Helix 48	48	B	398	400	Right-handed 310
Helix 49	49	B	401	421	Right-handed alpha
Helix 50	50	B	425	428	Right-handed 310
Helix 51	51	B	429	434	Right-handed alpha
Helix 52	52	B	434	440	Right-handed alpha
Helix 53	53	B	453	457	Right-handed 310
Helix 54	54	B	459	465	Right-handed alpha
Helix 55	55	B	469	486	Right-handed alpha
Helix 56	56	B	487	503	Right-handed alpha
Helix 57	57	B	509	521	Right-handed alpha
Helix 58	58	B	531	541	Right-handed alpha
Helix 59	59	B	607	610	Right-handed 310
Helix 60	60	B	621	624	Right-handed 310
Helix 61	61	B	634	645	Right-handed alpha
Helix 62	62	B	646	650	Right-handed 310
Helix 63	63	B	651	668	Right-handed alpha
Helix 64	64	B	672	679	Right-handed alpha
Helix 65	65	B	680	686	Right-handed 310
Helix 66	66	B	688	700	Right-handed alpha
Helix 67	67	B	701	706	Right-handed alpha
Helix 68	68	B	711	734	Right-handed alpha
Helix 69	69	B	743	760	Right-handed alpha
Helix 70	70	B	762	778	Right-handed alpha
Helix 71	71	B	786	798	Right-handed alpha
Helix 72	72	B	802	816	Right-handed alpha
Helix 73	73	B	818	829	Right-handed alpha
Helix 74	74	B	830	832	Right-handed 310
Helix 75	75	B	834	845	Right-handed alpha
Helix 76	76	B	852	865	Right-handed alpha
Helix 77	77	B	868	880	Right-handed alpha
Helix 78	78	B	880	887	Right-handed alpha
Helix 79	79	B	894	903	Right-handed alpha
Helix 80	80	B	904	906	Right-handed 310
Helix 81	81	B	908	922	Right-handed alpha
Helix 82	82	B	931	962	Right-handed alpha

There are 28 sheets in PDB entry 4F5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	170	180	anti-parallel
Strand 3	A	133	136	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	170	180	anti-parallel
Strand 3	A	98	109	anti-parallel
Strand 4	A	76	88	anti-parallel
Strand 5	A	227	235	parallel
Strand 6	A	259	263	anti-parallel
Strand 7	A	251	252	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	144	145	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	150	151	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	195	first strand
Strand 2	A	198	206	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	277	280	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	335	341	parallel
Strand 4	A	354	358	parallel
Strand 5	A	348	349	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	505	507	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	605	first strand
Strand 2	A	556	561	anti-parallel
Strand 3	A	546	550	anti-parallel
Strand 4	A	628	631	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	584	first strand
Strand 2	A	596	598	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	586	588	anti-parallel
Strand 3	A	617	619	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	170	180	anti-parallel
Strand 3	B	133	136	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	170	180	anti-parallel
Strand 3	B	96	109	anti-parallel
Strand 4	B	76	92	anti-parallel
Strand 5	B	227	235	parallel
Strand 6	B	259	263	anti-parallel
Strand 7	B	251	252	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	119	first strand
Strand 2	B	156	165	anti-parallel
Strand 3	B	144	145	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	119	first strand
Strand 2	B	156	165	anti-parallel
Strand 3	B	150	151	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	195	first strand
Strand 2	B	198	206	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	277	280	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	294	299	anti-parallel
Strand 3	B	335	341	parallel
Strand 4	B	354	358	parallel
Strand 5	B	348	349	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	505	507	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	605	first strand
Strand 2	B	556	561	anti-parallel
Strand 3	B	546	550	anti-parallel
Strand 4	B	628	631	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	584	first strand
Strand 2	B	596	598	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	586	588	anti-parallel
Strand 3	B	617	619	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	316	first strand
Strand 2	E	288	296	anti-parallel
Strand 3	E	333	340	parallel
Strand 4	E	408	427	parallel
Strand 5	E	382	389	anti-parallel
Strand 6	E	326	328	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	314	316	first strand
Strand 2	E	288	296	anti-parallel
Strand 3	E	333	340	parallel
Strand 4	E	408	427	parallel
Strand 5	E	397	405	anti-parallel
Strand 6	E	362	366	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	309	first strand
Strand 2	E	298	301	anti-parallel
Strand 3	E	343	344	parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	316	first strand
Strand 2	F	288	296	anti-parallel
Strand 3	F	333	340	parallel
Strand 4	F	409	427	parallel
Strand 5	F	381	389	anti-parallel
Strand 6	F	326	328	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	316	first strand
Strand 2	F	288	296	anti-parallel
Strand 3	F	333	340	parallel
Strand 4	F	409	427	parallel
Strand 5	F	397	404	anti-parallel
Strand 6	F	362	366	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	309	first strand
Strand 2	F	298	301	anti-parallel
Strand 3	F	343	344	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5C